Evidence map›Paper›PMID 35059681›Full record

ArticleInnovation (Cambridge (Mass.))2022

Experimental mapping of short-wavelength phonons in proteins.

Utsab R Shrestha, Eugene Mamontov, Hugh M O'Neill, Qiu Zhang, Alexander I Kolesnikov, Xiangqiang Chu

Open access · goldAbstract read
In one paragraph

Article in Innovation (Cambridge (Mass.)), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 58% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Utsab R ShresthaUT/ORNL Center for Molecular Biophysics, Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
Eugene MamontovNeutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
Hugh M O'NeillNeutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
Qiu ZhangNeutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
Alexander I KolesnikovNeutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
Xiangqiang ChuDepartment of Nuclear Science and Technology, Graduate School of China Academy of Engineering Physics, Beijing 100193, China.
Oak Ridge National Laboratory · USChina Academy of Engineering Physics · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phonons are quasi-particles, observed as lattice vibrations in periodic materials, that often dampen in the presence of structural perturbations. Nevertheless, phonon-like collective excitations exist in highly complex systems, such as proteins, although the origin of such collective motions has remained elusive. Here we present a picture of temperature and hydration dependence of collective excitations in green fluorescent protein (GFP) obtained by inelastic neutron scattering. Our results provide evidence that such excitations can be used as a measure of flexibility/softness and are possibly associated with the protein's activity. Moreover, we show that the hydration water in GFP interferes with the phonon propagation pathway, enhancing the structural rigidity and stability of GFP.

Indexed as

collective excitationsinelastic neutron scatteringprotein activityprotein dynamics

Identifiers

PMID35059681
PMCPMC8760453
OpenAlexW4200403885

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.