Evidence map›Paper›PMID 35059216›Full record

ArticleIUCrJ2022

Modeling a unit cell: crystallographic refinement procedure using the biomolecular MD simulation platform

Oleg Mikhailovskii, Yi Xue, Nikolai R Skrynnikov

Abstract read
In one paragraph

Article in IUCrJ, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Oleg MikhailovskiiLaboratory of Biomolecular NMR, St Petersburg State University, St Petersburg 199034, Russian Federation.
Yi XueSchool of Life Sciences, Tsinghua University, Beijing 100084, People's Republic of China.
Nikolai R SkrynnikovLaboratory of Biomolecular NMR, St Petersburg State University, St Petersburg 199034, Russian Federation.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A procedure has been developed for the refinement of crystallographic protein structures based on the biomolecular simulation program

Indexed as

Ambercomputational modelingensemble modelintracrystalline watermaximum likelihoodmolecular dynamicsmolecular replacementPhenixprotein crystalsprotein structure determinationprotein structure refinementrestrained simulationsRfreeX-ray crystallography

Identifiers

PMID35059216
PMCPMC8733891

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.