Evidence map›Paper›PMID 35058563›Full record

ArticleCommunications biology2022

Cooperative allostery and structural dynamics of streptavidin at cryogenic- and ambient-temperature.

Esra Ayan, Busra Yuksel, Ebru Destan, Fatma Betul Ertem, Gunseli Yildirim, Meryem Eren, Oleksandr M Yefanov, Anton Barty, Alexandra Tolstikova, Gihan K Ketawala and 17 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Temperature induces a shift from insulin dihexamer to hexamer in collective dynamics.Protein science : a publication of the Protein Society · 2025
    Article
  4. Structural insights into full-length human fascin1: a target for cancer treatment.Acta crystallographica. Section F, Structural biology communications · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 4 institutions in 3 countries.

Esra Ayan *Department of Molecular Biology and Genetics, Koc University, 34450, Istanbul, Turkey.
Busra Yuksel *Department of Molecular Biology and Genetics, Koc University, 34450, Istanbul, Turkey.ORCID 0000-0003-4396-7142
Ebru Destan *Department of Molecular Biology and Genetics, Koc University, 34450, Istanbul, Turkey.
Fatma Betul ErtemDepartment of Molecular Biology and Genetics, Koc University, 34450, Istanbul, Turkey.
Gunseli YildirimDepartment of Molecular Biology and Genetics, Koc University, 34450, Istanbul, Turkey.
Meryem ErenDepartment of Molecular Biology and Genetics, Koc University, 34450, Istanbul, Turkey.ORCID 0000-0001-5018-1450
Oleksandr M YefanovDeutsches Elektronen-Synchrotron, Notkestrasse 85, 22607, Hamburg, Germany.
Anton BartyDeutsches Elektronen-Synchrotron, Notkestrasse 85, 22607, Hamburg, Germany.
Alexandra TolstikovaDeutsches Elektronen-Synchrotron, Notkestrasse 85, 22607, Hamburg, Germany.
Gihan K KetawalaDepartment of Physics, Arizona State University, Tempe, AZ, 85287-1504, USA.
Sabine BothaDepartment of Physics, Arizona State University, Tempe, AZ, 85287-1504, USA.
E Han DaoStanford PULSE Institute, SLAC National Laboratory, Menlo Park, CA, 94025, USA.
Brandon HayesLinac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA.
Mengning LiangLinac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA.
Matthew H SeabergLinac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA.ORCID 0000-0002-4560-4698
Mark S HunterLinac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA.ORCID 0000-0002-0110-7075
Alexander BatyukLinac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA.
Valerio MarianiLinac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA.
Zhen SuLinac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA.
Frederic PoitevinLinac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA.
Chun Hong YoonLinac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA.
Christopher KupitzLinac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA.
Aina CohenStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA.
Tzanko DoukovStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA.ORCID 0000-0001-8625-2572
Raymond G SierraLinac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA, 94025, USA.ORCID 0000-0002-6253-8282
Çağdaş DağDepartment of Molecular Biology and Genetics, Koc University, 34450, Istanbul, Turkey.ORCID 0000-0003-1595-431X
Hasan DeMirciDepartment of Molecular Biology and Genetics, Koc University, 34450, Istanbul, Turkey. hdemirci@ku.edu.tr.ORCID 0000-0002-9135-5397
SLAC National Accelerator Laboratory · USKoç University · TRDeutsches Elektronen-Synchrotron DESY · DEArizona State University · US

Funding

A Synchrotron Radiation Structural Biology ResourcesP30GM133894 · NIGMS · STANFORD UNIVERSITY · PI Ritimukta Sarangi · 2020 to 2026
$43.3M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
NIGMS NIH HHS P41 GM103393
6 · The paper itself

Abstract

Multimeric protein assemblies are abundant in nature. Streptavidin is an attractive protein that provides a paradigm system to investigate the intra- and intermolecular interactions of multimeric protein complexes. Also, it offers a versatile tool for biotechnological applications. Here, we present two apo-streptavidin structures, the first one is an ambient temperature Serial Femtosecond X-ray crystal (Apo-SFX) structure at 1.7 Å resolution and the second one is a cryogenic crystal structure (Apo-Cryo) at 1.1 Å resolution. These structures are mostly in agreement with previous structural data. Combined with computational analysis, these structures provide invaluable information about structural dynamics of apo streptavidin. Collectively, these data further reveal a novel cooperative allostery of streptavidin which binds to substrate via water molecules that provide a polar interaction network and mimics the substrate biotin which displays one of the strongest affinities found in nature.

Indexed as

TemperatureStreptavidinStreptavidin

Identifiers

PMID35058563
PMCPMC8776744
OpenAlexW4221066186

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.