Evidence map›Paper›PMID 35058542›Full record

ArticleCommunications biology2022

Elevated mutation rates underlie the evolution of the aquatic plant family Podostemaceae.

Natsu Katayama, Satoshi Koi, Akira Sassa, Tetsuya Kurata, Ryoko Imaichi, Masahiro Kato, Tomoaki Nishiyama

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. The chromosome-level genome of the submerged plant Cryptocoryne crispatula provides insights into the terrestrial-freshwater transition in Araceae.DNA research : an international journal for rapid publication of reports on genes and genomes · 2024
    Article
  6. PhytoKeys · 2024
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 6 institutions in 1 country.

Natsu KatayamaGraduate School of Science, Chiba University, Chiba, 263-8522, Japan. katayama.natsu@gmail.com.ORCID http://orcid.org/0000-0003-1918-2564
Satoshi KoiBotanical Gardens, Osaka City University, Osaka, 575-0004, Japan.
Akira SassaGraduate School of Science, Chiba University, Chiba, 263-8522, Japan.
Tetsuya KurataDivision of Biological Science, Nara Institute of Science and Technology, Nara, 630-0192, Japan.
Ryoko ImaichiDepartment of Chemical and Biological Sciences, Faculty of Science, Japan Women's University, Tokyo, 112-8681, Japan.
Masahiro KatoDepartment of Botany, National Museum of Nature and Science, Tsukuba, 305-0005, Japan.
Tomoaki NishiyamaDivision of Integrated Omics Research, Research Center for Experimental Modeling of Human Disease, Kanazawa University, Kanazawa, 920-0934, Japan. tomoakin@staff.kanazawa-u.ac.jp.ORCID http://orcid.org/0000-0003-1279-7806
Chiba University · JPJapan Women's University · JPKanazawa University · JPNara Institute of Science and Technology · JPNational Museum of Nature and Science · JPOsaka City University · JP

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) 13J03136MEXT | Japan Society for the Promotion of Science (JSPS) 18J40090MEXT | Japan Society for the Promotion of Science (JSPS) 25291091
6 · The paper itself

Abstract

Molecular evolutionary rates vary among lineages and influence the evolutionary process. Here, we report elevated genome-wide mutation rates in Podostemaceae, a family of aquatic plants with a unique body plan that allows members to live on submerged rocks in fast-flowing rivers. Molecular evolutionary analyses using 1640 orthologous gene groups revealed two historical increases in evolutionary rates: the first at the emergence of the family and the second at the emergence of Podostemoideae, which is the most diversified subfamily. In both branches, synonymous substitution rates were elevated, indicating higher mutation rates. On early branches, mutations were biased in favour of AT content, which is consistent with a role for ultraviolet light-induced mutation and habitat shift. In ancestors of Podostemoideae, DNA-repair genes were enriched in genes under positive selection, which may have responded to the meristem architectural changes.

Indexed as

Biological EvolutionMutationLife History TraitsMagnoliopsida

Identifiers

PMID35058542
PMCPMC8776956
OpenAlexW4206075823

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.