Evidence map›Paper›PMID 35058449›Full record

ArticleScientific data2022

Proteomic cellular signatures of kinase inhibitor-induced cardiotoxicity.

Yuguang Xiong, Tong Liu, Tong Chen, Jens Hansen, Bin Hu, Yibang Chen, Gomathi Jayaraman, Stephan Schürer, Dusica Vidovic, Joseph Goldfarb and 5 more

Open access · goldAbstract readDataset
In one paragraph

Article in Scientific data, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Yuguang Xiong *Department of Pharmacological Sciences and Institute for Systems Biomedicine, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.ORCID http://orcid.org/0000-0001-5221-6266
Tong Liu *Center for Advanced Proteomics Research and Department of Microbiology, Biochemistry and Molecular Genetics, Rutgers University - New Jersey Medical School, Newark, NJ, 07103, USA.
Tong Chen *Center for Advanced Proteomics Research and Department of Microbiology, Biochemistry and Molecular Genetics, Rutgers University - New Jersey Medical School, Newark, NJ, 07103, USA.
Jens HansenDepartment of Pharmacological Sciences and Institute for Systems Biomedicine, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.ORCID http://orcid.org/0000-0002-1362-6534
Bin HuDepartment of Pharmacological Sciences and Institute for Systems Biomedicine, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Yibang ChenDepartment of Pharmacological Sciences and Institute for Systems Biomedicine, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Gomathi JayaramanDepartment of Pharmacological Sciences and Institute for Systems Biomedicine, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Stephan SchürerDepartment of Molecular and Cellular Pharmacology, Miller School of Medicine, University of Miami, Miami, FL, 33136, USA.
Dusica VidovicDepartment of Molecular and Cellular Pharmacology, Miller School of Medicine, University of Miami, Miami, FL, 33136, USA.
Joseph GoldfarbDepartment of Pharmacological Sciences and Institute for Systems Biomedicine, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Eric A SobieDepartment of Pharmacological Sciences and Institute for Systems Biomedicine, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Marc R BirtwistleDepartment of Pharmacological Sciences and Institute for Systems Biomedicine, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Ravi IyengarDepartment of Pharmacological Sciences and Institute for Systems Biomedicine, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA. ravi.iyengar@mssm.edu.
Hong LiCenter for Advanced Proteomics Research and Department of Microbiology, Biochemistry and Molecular Genetics, Rutgers University - New Jersey Medical School, Newark, NJ, 07103, USA. liho2@rutgers.edu.
Evren U AzelogluDepartment of Pharmacological Sciences and Institute for Systems Biomedicine, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA. evren.azeloglu@mssm.edu.ORCID http://orcid.org/0000-0001-6137-109X
Icahn School of Medicine at Mount Sinai · USRutgers, The State University of New Jersey · USUniversity of Miami · USClemson University · US

Funding

Data Coordination and Integration Center for LINCS-BD2KU54HL127624 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MA'AYAN, AVI, SCHURER, STEPHAN C · 2014 to 2019
$23.5M
Drug Combination Signatures for Prediction and Mitigation of ToxicityU54HG008098 · NHGRI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BIRTWISTLE, MARC R., SOBIE, ERIC A · 2014 to 2019
$11.8M
Rutgers Mass Spectrometry Core for Integrative Neuroscience ResearchP30NS046593 · NINDS · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI LI, HONG, LOBEL, PETER · 2004 to 2018
$9.9M
Spatial Models of Cell Regulatory NetworksR01GM072853 · NIGMS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI HONE, JAMES C, IYENGAR, SRINIVAS RAVI V · 2005 to 2019
$6.1M
Prediction of Major Adverse Kidney Events and Recovery (Pred-MAKER) in COVID-19 PatientsR01DK118222 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Evren U. AZELOGLU · 2018 to 2026
$4.3M
NO signaling by a Soluble Guanylyl Cyclase-Thioredoxin transnitrosation complexR01GM112415 · NIGMS · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI BEUVE, ANNIE V · 2015 to 2023
$3.5M
Systems Pharmacology for overcoming cell variabilityR01GM137056 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI IYENGAR, SRINIVAS RAVI V · 2020 to 2023
$1.9M
Orbitrap Fusion Lumos Tribrid MS System for Proteomics Research at Rutgers Newark CampusS10OD025047 · OD · RBHS-NEW JERSEY MEDICAL SCHOOL · PI LI, HONG · 2018 to 2018
$1.1M
NHGRI NIH HHS U54 HG008098NHLBI NIH HHS U54 HL127624NIDDK NIH HHS R01 DK118222NIGMS NIH HHS R01 GM112415NIGMS NIH HHS R01 GM137056NIH HHS S10 OD025047NINDS NIH HHS P30 NS046593U.S. Department of Health & Human Services | National Institutes of Health (NIH) 1S10OD025047U.S. Department of Health & Human Services | National Institutes of Health (NIH) P30NS046593U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01DK118222U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01GM072853U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01GM112415U.S. Department of Health & Human Services | National Institutes of Health (NIH) U54HG008098U.S. Department of Health & Human Services | National Institutes of Health (NIH) U54HL127624
6 · The paper itself

Abstract

Drug Toxicity Signature Generation Center (DToxS) at the Icahn School of Medicine at Mount Sinai is one of the centers for the NIH Library of Integrated Network-Based Cellular Signatures (LINCS) program. Its key aim is to generate proteomic and transcriptomic signatures that can predict cardiotoxic adverse effects of kinase inhibitors approved by the Food and Drug Administration. Towards this goal, high throughput shotgun proteomics experiments (308 cell line/drug combinations +64 control lysates) have been conducted. Using computational network analyses, these proteomic data can be integrated with transcriptomic signatures, generated in tandem, to identify cellular signatures of cardiotoxicity that may predict kinase inhibitor-induced toxicity and enable possible mitigation. Both raw and processed proteomics data have passed several quality control steps and been made publicly available on the PRIDE database. This broad protein kinase inhibitor-stimulated human cardiomyocyte proteomic data and signature set is valuable for prediction of drug toxicities.

Indexed as

Antineoplastic AgentsProteomicsCardiotoxicityHumansProtein Kinase InhibitorsTranscriptomeAntineoplastic AgentsProtein Kinase Inhibitors

Identifiers

PMID35058449
PMCPMC8776854
OpenAlexW4205495541

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.