Evidence map›Paper›PMID 35058360›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Recurrent mutations in topoisomerase IIα cause a previously undescribed mutator phenotype in human cancers.

Arnoud Boot, Mo Liu, Nicole Stantial, Viraj Shah, Willie Yu, Karin C Nitiss, John L Nitiss, Sue Jinks-Robertson, Steven G Rozen

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. A multispecies toolkit ofProceedings of the National Academy of Sciences of the United States of America · 2026
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  12. Multidrug Resistance: Are We Still Afraid of the Big Bad Wolf.Pharmaceuticals (Basel, Switzerland) · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Arnoud BootProgramme in Cancer and Stem Cell Biology, Duke University-National University of Singapore Medical School (Duke-NUS Medical School), 169857 Singapore; arnoud.boot@outlook.com sue.robertson@duke.edu steve.rozen@duke-nus.edu.sg.
Mo LiuProgramme in Cancer and Stem Cell Biology, Duke University-National University of Singapore Medical School (Duke-NUS Medical School), 169857 Singapore.
Nicole StantialDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710.ORCID 0000-0002-2949-9955
Viraj ShahPharmaceutical Sciences Department, University of Illinois at Chicago, Rockford, IL 61107.
Willie YuProgramme in Cancer and Stem Cell Biology, Duke University-National University of Singapore Medical School (Duke-NUS Medical School), 169857 Singapore.
Karin C NitissPharmaceutical Sciences Department, University of Illinois at Chicago, Rockford, IL 61107.
John L NitissPharmaceutical Sciences Department, University of Illinois at Chicago, Rockford, IL 61107.
Sue Jinks-RobertsonDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710; arnoud.boot@outlook.com sue.robertson@duke.edu steve.rozen@duke-nus.edu.sg.ORCID 0000-0001-5924-5852
Steven G RozenProgramme in Cancer and Stem Cell Biology, Duke University-National University of Singapore Medical School (Duke-NUS Medical School), 169857 Singapore; arnoud.boot@outlook.com sue.robertson@duke.edu steve.rozen@duke-nus.edu.sg.ORCID 0000-0002-4288-0056
National University of Singapore · SGUniversity of Illinois Chicago · USDuke Medical Center · US

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI JOHN N. NORTON · 1985 to 2026
$174.8M
Regulation of mitotic genome stability in yeast.R35GM118077 · NIGMS · DUKE UNIVERSITY · PI JINKS-ROBERTSON, SUE · 2016 to 2023
$4.5M
NCI NIH HHS P30 CA014236NIGMS NIH HHS R35 GM118077
6 · The paper itself

Abstract

Topoisomerases nick and reseal DNA to relieve torsional stress associated with transcription and replication and to resolve structures such as knots and catenanes. Stabilization of the yeast Top2 cleavage intermediates is mutagenic in yeast, but whether this extends to higher eukaryotes is less clear. Chemotherapeutic topoisomerase poisons also elevate cleavage, resulting in mutagenesis. Here, we describe p.K743N mutations in human topoisomerase hTOP2α and link them to a previously undescribed mutator phenotype in cancer. Overexpression of the orthologous mutant protein in yeast generated a characteristic pattern of 2- to 4-base pair (bp) duplications resembling those in tumors with p.K743N. Using mutant strains and biochemical analysis, we determined the genetic requirements of this mutagenic process and showed that it results from trapping of the mutant yeast yTop2 cleavage complex. In addition to 2- to 4-bp duplications, hTOP2α p.K743N is also associated with deletions that are absent in yeast. We call the combined pattern of duplications and deletions ID_TOP2α. All seven tumors carrying the hTOP2α p.K743N mutation showed ID_TOP2α, while it was absent from all other tumors examined (

Indexed as

MutationPhenotypeAllelesAmino Acid SubstitutionBase SequenceCell SurvivalDNA DamageDNA Mutational AnalysisDNA Topoisomerases, Type IIGene DuplicationGene RearrangementGenetic Predisposition to DiseaseGenotypeHumansINDEL MutationMutagenesisDNA Topoisomerases, Type IIPoly-ADP-Ribose Binding ProteinsTOP2A protein, humancancerduplicationsindel mutational signaturetopoisomerase IIyeast

Identifiers

PMID35058360
PMCPMC8795545
OpenAlexW4205220001

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.