Evidence map›Paper›PMID 35055162›Full record

ArticleInternational journal of molecular sciences2022

Transcriptome Analysis Reveals Multiple Genes and Complex Hormonal-Mediated Interactions with PEG during Adventitious Root Formation in Apple.

Shaohuan Li, Muhammad Mobeen Tahir, Tong Wu, Lingling Xie, Xiaoyun Zhang, Jiangping Mao, Anam Ayyoub, Libo Xing, Dong Zhang, Yun Shao

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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  5. Drought-Stress Induced Physiological and Molecular Changes in Plants.International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Shaohuan LiYangling Sub-Center of National Center for Apple Improvement, College of Horticulture, Northwest Agriculture & Forestry University, Yangling, Xianyang 712100, China.
Muhammad Mobeen TahirYangling Sub-Center of National Center for Apple Improvement, College of Horticulture, Northwest Agriculture & Forestry University, Yangling, Xianyang 712100, China.
Tong WuYangling Sub-Center of National Center for Apple Improvement, College of Horticulture, Northwest Agriculture & Forestry University, Yangling, Xianyang 712100, China.
Lingling XieYangling Sub-Center of National Center for Apple Improvement, College of Horticulture, Northwest Agriculture & Forestry University, Yangling, Xianyang 712100, China.
Xiaoyun ZhangThe Key Laboratory of Special Fruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization in Xinjiang Production and Construction Group, College of Agriculture, Shihezi University, Shihezi 832003, China.
Jiangping MaoYangling Sub-Center of National Center for Apple Improvement, College of Horticulture, Northwest Agriculture & Forestry University, Yangling, Xianyang 712100, China.
Anam AyyoubCollege of Life Sciences, Northwest Agriculture & Forestry University, Yangling, Xianyang 712100, China.
Libo XingYangling Sub-Center of National Center for Apple Improvement, College of Horticulture, Northwest Agriculture & Forestry University, Yangling, Xianyang 712100, China.
Dong ZhangYangling Sub-Center of National Center for Apple Improvement, College of Horticulture, Northwest Agriculture & Forestry University, Yangling, Xianyang 712100, China.
Yun ShaoYangling Sub-Center of National Center for Apple Improvement, College of Horticulture, Northwest Agriculture & Forestry University, Yangling, Xianyang 712100, China.
Northwest A&F University · CNShihezi University · CN

Funding

China Postdoctoral Science Foundation 2021M702693National Key research and development program of China 2018 YFD1000101, 2019YFD1000803Shaanxi Apple Industry Science and Technology Project 2020zdzx03-01-04Tang Scholar by Cyrus Tang Foundation C200022002Tang Scholar by Cyrus Tang Foundation and Northwest A&F UniversityThe China Apple Research System CARS-27
6 · The paper itself

Abstract

Adventitious root (AR) formation is a bottleneck for the mass propagation of apple rootstocks, and water stress severely restricts it. Different hormones and sugar signaling pathways in apple clones determine AR formation under water stress, but these are not entirely understood. To identify them, GL-3 stem cuttings were cultured on polyethylene glycol (PEG) treatment. The AR formation was dramatically decreased compared with the PEG-free control (CK) cuttings by increasing the endogenous contents of abscisic acid (ABA), zeatin riboside (ZR), and methyl jasmonate (JA-me) and reducing the indole-3-acetic acid (IAA) and gibberellic acid 3 (GA3) contents. We performed a transcriptomic analysis to identify the responses behind the phenotype. A total of 3204 differentially expressed genes (DEGs) were identified between CK and PEG, with 1702 upregulated and 1502 downregulated genes. Investigation revealed that approximately 312 DEGs were strongly enriched in hormone signaling, sugar metabolism, root development, and cell cycle-related pathways. Thus, they were selected for their possible involvement in adventitious rooting. However, the higher accumulation of ABA, ZR, and JA-me contents and the upregulation of their related genes, as well as the downregulation of sugar metabolism-related genes, lead to the inhibition of ARs. These results indicate that AR formation is a complicated biological process chiefly influenced by multiple hormonal signaling pathways and sugar metabolism. This is the first study to demonstrate how PEG inhibits AR formation in apple plants.

Indexed as

Abscisic AcidAcetatesCyclopentanesDehydrationGene Expression ProfilingGene Expression Regulation, PlantGibberellinsIndoleacetic AcidsIsopentenyladenosineMalusOxylipinsPlant ProteinsPlant RootsPolyethylene GlycolsSequence Analysis, RNAAbscisic AcidAcetatesCyclopentanesgibberellic acidGibberellinsindoleacetic acidIndoleacetic AcidsIsopentenyladenosinemethyl jasmonateOxylipinsPlant ProteinsPolyethylene Glycolszeatin ribosideapple rootstockAR formationhormonesmRNA analysisPEGstress

Identifiers

PMID35055162
PMCPMC8779459
OpenAlexW4206456463

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.