Evidence map›Paper›PMID 35054819›Full record

ArticleInternational journal of molecular sciences2022

Primary Founder Mutations in the

Hajnalka Laura Pálinkás, Lőrinc Pongor, Máté Balajti, Ádám Nagy, Kinga Nagy, Angéla Békési, Giampaolo Bianchini, Beáta G Vértessy, Balázs Győrffy

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Hajnalka Laura PálinkásGenome Metabolism Research Group, Institute of Enzymology, Research Centre for Natural Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary.ORCID 0000-0003-0761-2440
Lőrinc PongorTTK Lendület Cancer Biomarker Research Group, Institute of Enzymology, Research Centre for Natural Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary.
Máté BalajtiTTK Lendület Cancer Biomarker Research Group, Institute of Enzymology, Research Centre for Natural Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary.
Ádám NagyTTK Lendület Cancer Biomarker Research Group, Institute of Enzymology, Research Centre for Natural Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary.
Kinga NagyGenome Metabolism Research Group, Institute of Enzymology, Research Centre for Natural Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary.
Angéla BékésiGenome Metabolism Research Group, Institute of Enzymology, Research Centre for Natural Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary.
Giampaolo BianchiniDepartment of Medical Oncology, San Raffaele Scientific Institute, via Olgettina 60, 20132 Milan, Italy.ORCID 0000-0002-6790-6267
Beáta G VértessyGenome Metabolism Research Group, Institute of Enzymology, Research Centre for Natural Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary.ORCID 0000-0002-1288-2982
Balázs GyőrffyTTK Lendület Cancer Biomarker Research Group, Institute of Enzymology, Research Centre for Natural Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary.
Budapest University of Technology and Economics · HUSemmelweis University · HUInstitute of Molecular Life Sciences · HUSan Raffaele University of Rome · IT

Funding

Ministry for Innovation and Technology in Hungary 2020-4.1.1.-TKP2020Ministry of Human Capacities BME FIKP-BIONational Research, Development and Innovation Office 2018-1.3.1-VKE-2018-00032National Research, Development and Innovation Office 2018-2.1.17-TET-KR-00001National Research, Development and Innovation Office 2020-1.1.6-JÖVŐ-2021-00013National Research, Development and Innovation Office K135231National Research, Development and Innovation Office NKP-2018-1.2.1-NKP-2018-00005National Research, Development and Innovation Office VEKOP-2.3.2-16-2017-00013
6 · The paper itself

Abstract

The clonal composition of a malignant tumor strongly depends on cellular dynamics influenced by the asynchronized loss of DNA repair mechanisms. Here, our aim was to identify founder mutations leading to subsequent boosts in mutation load. The overall mutation burden in 591 colorectal cancer tumors was analyzed, including the mutation status of DNA-repair genes. The number of mutations was first determined across all patients and the proportion of genes having mutation in each percentile was ranked. Early mutations in DNA repair genes preceding a mutational expansion were designated as founder mutations. Survival analysis for gene expression was performed using microarray data with available relapse-free survival. Of the 180 genes involved in DNA repair, the top five founder mutations were in

Indexed as

Founder EffectAtaxia Telangiectasia Mutated ProteinsCell Line, TumorColorectal NeoplasmsDNA-Activated Protein KinaseDNA Mutational AnalysisDNA RepairGene Expression Regulation, NeoplasticHumansMutagenesisMutationMutation RatePhenotypeSurvival AnalysisUltraviolet RaysAtaxia Telangiectasia Mutated ProteinsATM protein, humanDNA-Activated Protein KinasePRKDC protein, humancancerDNA repairmutation burdennext generation sequencingnon-homologous end joiningsurvival

Identifiers

PMID35054819
PMCPMC8775830
OpenAlexW4205985379

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.