Evidence map›Paper›PMID 35053385›Full record

ArticleCells2022

Large-Scale, Wavelet-Based Analysis of Lysosomal Trajectories and Co-Movements of Lysosomes with Nanoparticle Cargos.

Konstantin Polev, Diana V Kolygina, Kristiana Kandere-Grzybowska, Bartosz A Grzybowski

Open access · goldAbstract read
In one paragraph

Article in Cells, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Konstantin PolevCenter for Soft and Living Matter, Institute for Basic Science (IBS), Ulsan 44919, Korea.ORCID 0000-0002-0504-5940
Diana V KolyginaCenter for Soft and Living Matter, Institute for Basic Science (IBS), Ulsan 44919, Korea.ORCID 0000-0003-2664-6072
Kristiana Kandere-GrzybowskaCenter for Soft and Living Matter, Institute for Basic Science (IBS), Ulsan 44919, Korea.ORCID 0000-0003-4495-1820
Bartosz A GrzybowskiCenter for Soft and Living Matter, Institute for Basic Science (IBS), Ulsan 44919, Korea.ORCID 0000-0001-6613-4261
Institute for Basic Science · KR

Funding

Institute for Basic Science IBS-R020-D
6 · The paper itself

Abstract

Lysosomes-that is, acidic organelles known for degradation/recycling-move through the cytoplasm alternating between bursts of active transport and short, diffusive motions or even pauses. While their mobility is essential for lysosomes' fusogenic and non-fusogenic interactions with target organelles, their movements have not been characterized in adequate detail. Here, large-scale statistical analysis of lysosomal movement trajectories reveals that lysosome trajectories in all examined cell types-both cancer and noncancerous ones-are superdiffusive and characterized by heavy-tailed distributions of run and flight lengths. Consideration of Akaike weights for various potential models (lognormal, power law, truncated power law, stretched exponential, and exponential) indicates that the experimental data are best described by the lognormal distribution, which, in turn, can be related to one of the space-search strategies particularly effective when "thorough" search needs to balance search for rare target(s) (organelles). In addition, automated, wavelet-based analysis allows for co-tracking the motions of lysosomes and the cargos they carry-particularly the nanoparticle aggregates known to cause selective lysosome disruption in cancerous cells. The methods we describe here could help study nanoparticle assemblies, viruses, and other objects transported inside various vesicle types, as well as coordinated movements of organelles/particles in the cytoplasm. Custom-written code that includes integrated workflow for our analyses is made available for academic use.

Indexed as

Wavelet AnalysisAnimalsBiological TransportCell Line, TumorHumansLysosomesMetal NanoparticlesMiceNanoparticlescancer lysosomesconfocal reflection microscopycontinuous wavelet transformlognormal distributionlysosome-nanoparticle co-movementlysosome transportmaximum-likelihood estimatesmixed-charge nanoparticles

Identifiers

PMID35053385
PMCPMC8774281
OpenAlexW4206762056

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.