Evidence map›Paper›PMID 35051351›Full record

ArticleMolecular cell2022

Cas11 enables genome engineering in human cells with compact CRISPR-Cas3 systems.

Renke Tan, Ryan K Krueger, Max J Gramelspacher, Xufei Zhou, Yibei Xiao, Ailong Ke, Zhonggang Hou, Yan Zhang

Open access · greenAbstract read
In one paragraph

Article in Molecular cell, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
6.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 75 citations in OpenAlex.

  1. Review
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  4. Gigabase-scale deletion scanning of the human genome.bioRxiv : the preprint server for biology · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Renke TanDepartment of Biological Chemistry, University of Michigan, Ann Arbor, MI, USA.
Ryan K KruegerDepartment of Biological Chemistry, University of Michigan, Ann Arbor, MI, USA.
Max J GramelspacherDepartment of Biological Chemistry, University of Michigan, Ann Arbor, MI, USA.
Xufei ZhouDepartment of Biological Chemistry, University of Michigan, Ann Arbor, MI, USA.
Yibei XiaoState Key Laboratory of Natural Medicines, Department of Pharmacology, China Pharmaceutical University, Nanjing, China.
Ailong KeDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA.
Zhonggang HouDepartment of Biological Chemistry, University of Michigan, Ann Arbor, MI, USA. Electronic address: houzg@umich.edu.
Yan ZhangDepartment of Biological Chemistry, University of Michigan, Ann Arbor, MI, USA. Electronic address: yzhangbc@med.umich.edu.
University of Michigan · USChina Pharmaceutical University · CNCornell University · US

Funding

Mechanistic Investigation of RNA-Mediated Gene Regulation and ImmunityR35GM118174 · NIGMS · YALE UNIVERSITY · PI AILONG KE · 2016 to 2026
$7.9M
Generation of DNA memory by bacterial CRISPR-Cas9 systemsR35GM137883 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Yan Zhang · 2020 to 2026
$3.0M
The alternative roles of Neisseria CRISPR-Cas9 in endogenous gene regulation and bacterial physiologyR00GM117268 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ZHANG, YAN · 2017 to 2019
$747k
The alternative roles of Neisseria CRISPR-Cas9 in endogenous gene regulation and bacterial physiologyK99GM117268 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ZHANG, YAN · 2016 to 2017
$104k
NIGMS NIH HHS K99 GM117268NIGMS NIH HHS R00 GM117268NIGMS NIH HHS R35 GM118174NIGMS NIH HHS R35 GM137883
6 · The paper itself

Abstract

Leading CRISPR-Cas technologies employ Cas9 and Cas12 enzymes that generate RNA-guided dsDNA breaks. Yet, the most abundant microbial adaptive immune systems, Type I CRISPRs, are under-exploited for eukaryotic applications. Here, we report the adoption of a minimal CRISPR-Cas3 from Neisseria lactamica (Nla) type I-C system to create targeted large deletions in the human genome. RNP delivery of its processive Cas3 nuclease and target recognition complex Cascade can confer ∼95% editing efficiency. Unexpectedly, NlaCascade assembly in bacteria requires internal translation of a hidden component Cas11 from within the cas8 gene. Furthermore, expressing a separately encoded NlaCas11 is the key to enable plasmid- and mRNA-based editing in human cells. Finally, we demonstrate that supplying cas11 is a universal strategy to systematically implement divergent I-C, I-D, and I-B CRISPR-Cas3 editors with compact sizes, distinct PAM preferences, and guide orthogonality. These findings greatly expand our ability to engineer long-range genome edits.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Cas SystemsGene DeletionGene EditingGenome, HumanBacterial ProteinsCRISPR-Associated ProteinsHEK293 CellsHeLa CellsHumansNeisseria lactamicaRibonucleoproteinsBacterial ProteinsCRISPR-Associated ProteinsRibonucleoproteinsCas11Cas3CascadeCRISPRcrRNADNA targetinggene editinggenome engineeringlarge deletionNeisseria

Identifiers

PMID35051351
PMCPMC8964063
OpenAlexW4206227631

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.