Evidence map›Paper›PMID 35051222›Full record

ArticlePloS one2022

Deciphering the evolution of composite-type GSKIP in mitochondria and Wnt signaling pathways.

Cheng-Yu Tsai, Shean-Jaw Chiou, Huey-Jiun Ko, Yu-Fan Cheng, Sin-Yi Lin, Yun-Ling Lai, Chen-Yen Lin, Chihuei Wang, Jiin-Tsuey Cheng, Hsin-Fu Liu and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Cheng-Yu TsaiCollege of Medicine, Kaohsiung Medical University and National Health Research Institutes, Kaohsiung, Taiwan.ORCID 0000-0002-0539-8201
Shean-Jaw ChiouDepartment of Biochemistry, College of Medicine, Kaohsiung Medical University, Kaohsiung, Taiwan.
Huey-Jiun KoDepartment of Biochemistry, College of Medicine, Kaohsiung Medical University, Kaohsiung, Taiwan.
Yu-Fan ChengDepartment of Biochemistry, College of Medicine, Kaohsiung Medical University, Kaohsiung, Taiwan.
Sin-Yi LinDepartment of Biochemistry, College of Medicine, Kaohsiung Medical University, Kaohsiung, Taiwan.
Yun-Ling LaiDepartment of Biochemistry, College of Medicine, Kaohsiung Medical University, Kaohsiung, Taiwan.
Chen-Yen LinDepartment of Biochemistry, College of Medicine, Kaohsiung Medical University, Kaohsiung, Taiwan.
Chihuei WangDepartment of Biotechnology, Kaohsiung Medical University, Kaohsiung, Taiwan.
Jiin-Tsuey ChengDepartment of Biological Sciences, National Sun Yat-Sen University, Kaohsiung, Taiwan.
Hsin-Fu LiuDepartment of Medical Research, Mackay Memorial Hospital, Taipei, Taiwan.
Aij-Li KwanCollege of Medicine, Kaohsiung Medical University and National Health Research Institutes, Kaohsiung, Taiwan.
Joon-Khim LohDepartment of Neurosurgery, Kaohsiung Medical University Hospital, Kaohsiung, Taiwan.
Yi-Ren HongCollege of Medicine, Kaohsiung Medical University and National Health Research Institutes, Kaohsiung, Taiwan.ORCID 0000-0001-5470-6090
Kaohsiung Medical University · TWNational Sun Yat-sen University · TWMackay Memorial Hospital · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We previously revealed the origin of mammalian simple-type glycogen synthase kinase interaction protein (GSKIP), which served as a scavenger and a competitor in the Wnt signaling pathway during evolution. In this study, we investigated the conserved and nonconserved regions of the composite-type GSKIP by utilizing bioinformatics tools, site-directed mutagenesis, and yeast two-hybrid methods. The regions were denoted as the pre-GSK3β binding site, which is located at the front of GSK3β-binding sites. Our data demonstrated that clustered mitochondria protein 1 (CLU1), a type of composite-type GSKIP that exists in the mitochondria of all eukaryotic organisms, possesses the protein known as domain of unknown function 727 (DUF727), with a pre-GSK3β-binding site and a mutant GSK3β-binding flanking region. Another type of composite-type GSKIP, armadillo repeat containing 4 (ARMC4), which is known for cilium movement in vertebrates, contains an unintegrated DUF727 flanking region with a pre-GSK3β-binding site (115SPxF118) only. In addition, the sequence of the GSK3β-binding site in CLU1 revealed that Q126L and V130L were not conserved, differing from the ideal GSK3β-binding sequence of simple-type GSKIP. We further illustrated two exceptions, namely 70 kilodalton heat shock proteins (Hsp70/DnaK) and Mitofilin in nematodes, that presented an unexpected ideal GSK3β-binding region with a pre-GSK3β sequence; this composite-type GSKIP could only occur in vertebrate species. Furthermore, we revealed the importance of the pre-GSK3β-binding site (118F or 118Y) and various mutant GSK3β-binding sites of composite-type GSKIP. Collectively, our data suggest that the new composite-type GSKIP starts with a DUF727 domain followed by a pre-GSK3β-binding site, with the subsequent addition of the GSK3β-binding site, which plays vital roles for CLU1, Mitofilin, and ARMC4 in mitochondria and Wnt signaling pathways during evolution.

Indexed as

Amino Acid SequenceAnimalsArmadillo Domain ProteinsBinding SitesCloning, MolecularConserved SequenceEvolution, MolecularGlycogen Synthase Kinase 3 betaHumansMitochondriaModels, MolecularMutagenesis, Site-DirectedPhylogenyProtein BindingProtein ConformationRepressor ProteinsArmadillo Domain ProteinsCLUH protein, humanGlycogen Synthase Kinase 3 betaGSK3B protein, humanGSKIP protein, humanODAD2 protein, humanRepressor ProteinsRNA-Binding Proteins

Identifiers

PMID35051222
PMCPMC8775565
OpenAlexW4205512973

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.