Evidence map›Paper›PMID 35049897›Full record

ArticleMarine drugs2021

Not Drug-like, but Like Drugs: Cnidaria Natural Products.

Claire Laguionie-Marchais, A Louise Allcock, Bill J Baker, Ellie-Ann Conneely, Sarah G Dietrick, Fiona Kearns, Kate McKeever, Ryan M Young, Connor A Sierra, Sylvia Soldatou and 2 more

Open access · goldAbstract read
In one paragraph

Article in Marine drugs, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 9 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Claire Laguionie-MarchaisSchool of Natural Sciences and Ryan Institute, National University of Ireland Galway, H91 TK33 Galway, Ireland.
A Louise AllcockSchool of Natural Sciences and Ryan Institute, National University of Ireland Galway, H91 TK33 Galway, Ireland.ORCID 0000-0002-4806-0040
Bill J BakerDepartment of Chemistry, University of South Florida, Tampa, FL 33620-5250, USA.ORCID 0000-0003-3033-5779
Ellie-Ann ConneelySchool of Natural Sciences and Ryan Institute, National University of Ireland Galway, H91 TK33 Galway, Ireland.ORCID 0000-0002-6139-9444
Sarah G DietrickDepartment of Chemistry, University of South Florida, Tampa, FL 33620-5250, USA.
Fiona KearnsDepartment of Chemistry, University of South Florida, Tampa, FL 33620-5250, USA.
Kate McKeeverSchool of Natural Sciences and Ryan Institute, National University of Ireland Galway, H91 TK33 Galway, Ireland.
Ryan M YoungSchool of Natural Sciences and Ryan Institute, National University of Ireland Galway, H91 TK33 Galway, Ireland.
Connor A SierraDepartment of Chemistry, University of South Florida, Tampa, FL 33620-5250, USA.ORCID 0000-0002-0465-0356
Sylvia SoldatouDepartment of Chemistry, University of South Florida, Tampa, FL 33620-5250, USA.ORCID 0000-0002-3868-102X
H Lee WoodcockDepartment of Chemistry, University of South Florida, Tampa, FL 33620-5250, USA.ORCID 0000-0003-3539-273X
Mark P JohnsonSchool of Natural Sciences and Ryan Institute, National University of Ireland Galway, H91 TK33 Galway, Ireland.
Ollscoil na Gaillimhe – University of Galway · IEUniversity of South Florida · US

Funding

Design and application ofrobust and efficient QM/MM free energy simulation methods for biomolecular systemsR01GM129519 · NIGMS · UNIVERSITY OF SOUTH FLORIDA · PI WOODCOCK III, HENRY LEE · 2018 to 2025
$1.9M
NIGMS NIH HHS R01 GM129519Science Foundation Ireland SFI/15/1A/3100
6 · The paper itself

Abstract

Phylum Cnidaria has been an excellent source of natural products, with thousands of metabolites identified. Many of these have not been screened in bioassays. The aim of this study was to explore the potential of 5600 Cnidaria natural products (after excluding those known to derive from microbial symbionts), using a systematic approach based on chemical space, drug-likeness, predicted toxicity, and virtual screens. Previous drug-likeness measures: the rule-of-five, quantitative estimate of drug-likeness (QED), and relative drug likelihoods (RDL) are based on a relatively small number of molecular properties. We augmented this approach using reference drug and toxin data sets defined for 51 predicted molecular properties. Cnidaria natural products overlap with drugs and toxins in this chemical space, although a multivariate test suggests that there are some differences between the groups. In terms of the established drug-likeness measures, Cnidaria natural products have generally lower QED and RDL scores than drugs, with a higher prevalence of metabolites that exceed at least one rule-of-five threshold. An index of drug-likeness that includes predicted toxicity (ADMET-score), however, found that Cnidaria natural products were more favourable than drugs. A measure of the distance of individual Cnidaria natural products to the centre of the drug distribution in multivariate chemical space was related to RDL, ADMET-score, and the number of rule-of-five exceptions. This multivariate similarity measure was negatively correlated with the QED score for the same metabolite, suggesting that the different approaches capture different aspects of the drug-likeness of individual metabolites. The contrasting of different drug similarity measures can help summarise the range of drug potential in the Cnidaria natural product data set. The most favourable metabolites were around 210-265 Da, quite often sesquiterpenes, with a moderate degree of complexity. Virtual screening against cancer-relevant targets found wide evidence of affinities, with Glide scores <-7 in 19% of the Cnidaria natural products.

Indexed as

Biological ProductsCnidariaAnimalsAquatic OrganismsDrug Evaluation, PreclinicalBiological ProductsADMEchemical spacedrug-likenessMarinLitmultivariaterule-of-fivevirtual screening

Identifiers

PMID35049897
PMCPMC8779300
OpenAlexW4205919289

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.