Evidence map›Paper›PMID 35049502›Full record

ArticleeLife2022

Xbp1 and Brachyury establish an evolutionarily conserved subcircuit of the notochord gene regulatory network.

Yushi Wu, Arun Devotta, Diana S José-Edwards, Jamie E Kugler, Lenny J Negrón-Piñeiro, Karina Braslavskaya, Jermyn Addy, Jean-Pierre Saint-Jeannet, Anna Di Gregorio

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Fine-Tuned Expression of Evolutionarily Conserved Signaling Molecules in theInternational journal of molecular sciences · 2024
    Article
  4. Review
  5. Article
  6. Searching for marine embryos, finding my path.Genesis (New York, N.Y. : 2000) · 2023
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Yushi Wu *Department of Molecular Pathobiology, New York University College of Dentistry, New York, United States.
Arun Devotta *Department of Molecular Pathobiology, New York University College of Dentistry, New York, United States.
Diana S José-Edwards *Department of Molecular Pathobiology, New York University College of Dentistry, New York, United States.
Jamie E KuglerDepartment of Molecular Pathobiology, New York University College of Dentistry, New York, United States.
Lenny J Negrón-PiñeiroDepartment of Molecular Pathobiology, New York University College of Dentistry, New York, United States.
Karina BraslavskayaDepartment of Molecular Pathobiology, New York University College of Dentistry, New York, United States.
Jermyn AddyDepartment of Molecular Pathobiology, New York University College of Dentistry, New York, United States.
Jean-Pierre Saint-JeannetDepartment of Molecular Pathobiology, New York University College of Dentistry, New York, United States.ORCID 0000-0003-3259-2103
Anna Di GregorioDepartment of Molecular Pathobiology, New York University College of Dentistry, New York, United States.ORCID 0000-0003-4089-7484
New York University · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ANIRBAN MAITRA · 1985 to 2026
$83.1M
TRAINING PROGRAM IN MOLECULAR AND CELLULAR BIOLOGYT32GM008539 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI BROWN, ANTHONY M.C. · 1995 to 2020
$5.0M
TRAINING PROGRAM IN DEVELOPMENTAL GENETICS.T32HD007520 · NICHD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI TREISMAN, JESSICA E · 1999 to 2023
$3.9M
P30 Center in Craniofacial Bone BiologyP30DE020754 · NIDCR · NEW YORK UNIVERSITY · PI PARTRIDGE, NICOLA C · 2009 to 2010
$1.5M
Unraveling the essential gene regulatory network underlying notochord development in CionaR03HD098395 · NICHD · NEW YORK UNIVERSITY · PI DI GREGORIO, ANNA · 2019 to 2021
$238k
NCI NIH HHS P30 CA016087NICHD NIH HHS R03 HD098395NICHD NIH HHS T32 HD007520NIDCR NIH HHS P30 DE020754NIGMS NIH HHS T32 GM008539
6 · The paper itself

Abstract

Gene regulatory networks coordinate the formation of organs and structures that compose the evolving body plans of different organisms. We are using a simple chordate model, the

Indexed as

Gene Expression Regulation, DevelopmentalGene Regulatory NetworksAnimalsBasic-Leucine Zipper Transcription FactorsBrachyury ProteinCiona intestinalisFetal ProteinsMorphogenesisNotochordT-Box Domain ProteinsX-Box Binding Protein 1Xenopus ProteinsBasic-Leucine Zipper Transcription FactorsBrachyury ProteinFetal ProteinsT-Box Domain ProteinsX-Box Binding Protein 1Xbp1 protein, XenopusXenopus ProteinsBrachyuryC. intestinalisCiona robustadevelopmental biologyevolutionary biologygene regulatory networknotochordXBP1Xenopus

Identifiers

PMID35049502
PMCPMC8803312
OpenAlexW4205898392

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.