Evidence map›Paper›PMID 35049349›Full record

ArticleMicrobiology resource announcements2022

Genome Assembly of the Ty1-Less Saccharomyces paradoxus Strain DG1768.

Jingxuan Chen, Holly McQueary, David W Hall, Peter Philippsen, David J Garfinkel, Casey M Bergman

Abstract read
In one paragraph

Article in Microbiology resource announcements, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Capsid flexibility during Ty1 virus-like particle assembly.bioRxiv : the preprint server for biology · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. An interchangeable prion-like domain is required for Ty1 retrotransposition.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jingxuan ChenInstitute of Bioinformatics, University of Georgia, Athens, Georgia, USA.ORCID 0000-0001-6313-7264
Holly McQuearyDepartment of Genetics, University of Georgia, Athens, Georgia, USA.ORCID 0000-0002-5635-8250
David W HallDepartment of Genetics, University of Georgia, Athens, Georgia, USA.ORCID 0000-0001-7708-6656
Peter PhilippsenMolecular Microbiology, Biozentrum, University of Basel, Basel, Switzerland.ORCID 0000-0003-4662-7186
David J GarfinkelDepartment of Genetics, University of Georgia, Athens, Georgia, USA.ORCID 0000-0001-6234-2426
Casey M BergmanInstitute of Bioinformatics, University of Georgia, Athens, Georgia, USA.ORCID 0000-0002-5462-9854

Funding

Effectors of retrotransposon movementR01GM124216 · NIGMS · UNIVERSITY OF GEORGIA · PI GARFINKEL, DAVID J. · 2018 to 2021
$1.9M
HHS | National Institutes of Health (NIH) R01GM124216NIGMS NIH HHS R01 GM124216UGA | University of Georgia Research Foundation (UGARF)
6 · The paper itself

Abstract

Here, we report an essentially complete genome assembly for the Ty1-less Saccharomyces paradoxus strain DG1768 (derivative of strain 337) based on PacBio and Illumina shotgun sequence data. We also document the genetic alterations that make this yeast strain a key resource for Ty1 mobility studies.

Identifiers

PMID35049349
PMCPMC8772602

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.