Evidence map›Paper›PMID 35049114›Full record

ArticleEnvironmental microbiology2022

Prevalence of genetically similar Flavobacterium columnare phages across aquaculture environments reveals a strong potential for pathogen control.

Anniina Runtuvuori-Salmela, Heidi M T Kunttu, Elina Laanto, Gabriel M F Almeida, Kati Mäkelä, Mathias Middelboe, Lotta-Riina Sundberg

Open access · bronzeAbstract read
In one paragraph

Article in Environmental microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 14 citations in OpenAlex.

  1. Pooled it
  2. Viruses · 2025
    Article
  3. Review
  4. Article
  5. Prophage-Derived Regions inInternational journal of molecular sciences · 2023
    Article
  6. Comparison of Delivery Methods in Phage Therapy againstAntibiotics (Basel, Switzerland) · 2021
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Anniina Runtuvuori-SalmelaDepartment of Biological and Environmental Science and Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland.ORCID 0000-0002-4614-6019
Heidi M T KunttuDepartment of Biological and Environmental Science and Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland.
Elina LaantoDepartment of Biological and Environmental Science and Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland.ORCID 0000-0003-4172-3128
Gabriel M F AlmeidaDepartment of Biological and Environmental Science and Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland.ORCID 0000-0003-2317-5092
Kati MäkeläDepartment of Biological and Environmental Science and Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland.
Mathias MiddelboeDepartment of Biology, Marine Biological Section, University of Copenhagen, Helsingør, Denmark.ORCID 0000-0002-9587-9171
Lotta-Riina SundbergDepartment of Biological and Environmental Science and Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland.ORCID 0000-0003-3510-4398
University of Jyväskylä · FIUiT The Arctic University of Norway · NOUniversity of Copenhagen · DKUniversity of Helsinki · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Intensive aquaculture conditions expose fish to bacterial infections, leading to significant financial losses, extensive antibiotic use and risk of antibiotic resistance in target bacteria. Flavobacterium columnare causes columnaris disease in aquaculture worldwide. To develop a bacteriophage-based control of columnaris disease, we isolated and characterized 126 F. columnare strains and 63 phages against F. columnare from Finland and Sweden in 2017. Bacterial isolates were virulent on rainbow trout (Oncorhynchus mykiss) and fell into four previously described genetic groups A, C, E and G, with genetic groups C and E being the most virulent. Phage host range studied against a collection of 227 bacterial isolates (from 2013 to 2017) demonstrated modular infection patterns based on host genetic group. Phages infected contemporary and previously isolated bacterial hosts, but bacteria isolated most recently were generally resistant to previously isolated phages. Despite large differences in geographical origin, isolation year or host range of the phages, whole-genome sequencing of 56 phages showed high level of genetic similarity to previously isolated F. columnare phages (Ficleduovirus, Myoviridae). Altogether, this phage collection demonstrates a potential for use in phage therapy.

Indexed as

BacteriophagesFish DiseasesFlavobacteriaceae InfectionsOncorhynchus mykissAnimalsAquacultureFlavobacteriumPrevalence

Identifiers

PMID35049114
PMCPMC9304149
OpenAlexW4225581313

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.