Evidence map›Paper›PMID 35046037›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Structure and function of an effector domain in antiviral factors and tumor suppressors SAMD9 and SAMD9L.

Shuxia Peng, Xiangzhi Meng, Fushun Zhang, Prabhat Kumar Pathak, Juhi Chaturvedi, Jaime Coronado, Marisol Morales, Yuanhui Mao, Shu-Bing Qian, Junpeng Deng and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 45 citations in OpenAlex.

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  10. A De Novo Mutation (c.2423A>G) inHuman mutation · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Shuxia PengDepartment of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, OK 74078.ORCID 0000-0002-3078-3566
Xiangzhi MengDepartment of Microbiology, Immunology and Molecular Genetics, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229.ORCID 0000-0002-3828-5609
Fushun ZhangDepartment of Microbiology, Immunology and Molecular Genetics, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229.
Prabhat Kumar PathakDepartment of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, OK 74078.
Juhi ChaturvediDepartment of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, OK 74078.
Jaime CoronadoDepartment of Microbiology, Immunology and Molecular Genetics, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229.ORCID 0000-0001-6532-4768
Marisol MoralesDepartment of Microbiology, Immunology and Molecular Genetics, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229.ORCID 0000-0001-5206-2738
Yuanhui MaoDivision of Nutritional Sciences, Cornell University, Ithaca, NY 14853.ORCID 0000-0002-0893-2588
Shu-Bing QianDivision of Nutritional Sciences, Cornell University, Ithaca, NY 14853.ORCID 0000-0002-4127-1136
Junpeng DengDepartment of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, OK 74078; xiangy@uthscsa.edu Junpeng.deng@okstate.edu.ORCID 0000-0002-5254-7775
Yan XiangDepartment of Microbiology, Immunology and Molecular Genetics, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229; xiangy@uthscsa.edu Junpeng.deng@okstate.edu.ORCID 0000-0002-7633-1629
The University of Texas Health Science Center at San Antonio · USOklahoma State University · USCornell University · US

Funding

TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Lei Zheng · 1991 to 2026
$59.1M
Institute for Integration of Medicine & Science: A Partnership to Improve HealthUL1TR002645 · NCATS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI CLARK, ROBERT A, HARGREAVES, KENNETH M · 2018 to 2022
$20.4M
Novel Translational Control Mechanisms in Host Range Restriction of PoxvirusR01AI151638 · NIAID · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI YAN XIANG · 2020 to 2026
$3.4M
High Throughput DNA Sequencer: Illumina HiSeq 3000 SequencerS10OD021805 · OD · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LAI, ZHAO · 2016 to 2016
$600k
Developing small molecule inhibitors for modulating cytokine IL18 activitiesR21AI153948 · NIAID · OKLAHOMA STATE UNIVERSITY STILLWATER · PI DENG, JUNPENG · 2021 to 2022
$430k
Structure function studies of a molecular complex for generating viral membraneR21AI149295 · NIAID · OKLAHOMA STATE UNIVERSITY STILLWATER · PI DENG, JUNPENG, XIANG, YAN · 2020 to 2021
$430k
NCATS NIH HHS UL1 TR002645NCI NIH HHS P30 CA054174NIAID NIH HHS R01 AI151638NIAID NIH HHS R21 AI149295NIAID NIH HHS R21 AI153948NIH HHS S10 OD021805
6 · The paper itself

Abstract

SAMD9 and SAMD9L (SAMD9/9L) are antiviral factors and tumor suppressors, playing a critical role in innate immune defense against poxviruses and the development of myeloid tumors. SAMD9/9L mutations with a gain-of-function (GoF) in inhibiting cell growth cause multisystem developmental disorders including many pediatric myelodysplastic syndromes. Predicted to be multidomain proteins with an architecture like that of the NOD-like receptors, SAMD9/9L molecular functions and domain structures are largely unknown. Here, we identified a SAMD9/9L effector domain that functions by binding to double-stranded nucleic acids (dsNA) and determined the crystal structure of the domain in complex with DNA. Aided with precise mutations that differentially perturb dsNA binding, we demonstrated that the antiviral and antiproliferative functions of the wild-type and GoF SAMD9/9L variants rely on dsNA binding by the effector domain. Furthermore, we showed that GoF variants inhibit global protein synthesis, reduce translation elongation, and induce proteotoxic stress response, which all require dsNA binding by the effector domain. The identification of the structure and function of a SAMD9/9L effector domain provides a therapeutic target for SAMD9/9L-associated human diseases.

Indexed as

Models, MolecularProtein ConformationProtein Interaction Domains and MotifsBinding SitesDNA-Binding ProteinsHumansIntracellular Signaling Peptides and ProteinsMutationProtein BindingStress, PhysiologicalStructure-Activity RelationshipTumor Suppressor ProteinsDNA-Binding ProteinsIntracellular Signaling Peptides and ProteinsSAMD9 protein, humanTumor Suppressor Proteinsinnate immunitymyelodysplasia syndromemyeloid malignanciesNODpoxvirus

Identifiers

PMID35046037
PMCPMC8795524
OpenAlexW4206710640

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.