Evidence map›Paper›PMID 35045337›Full record

ArticleNeuron2022

Genome-wide identification of the genetic basis of amyotrophic lateral sclerosis.

Sai Zhang, Johnathan Cooper-Knock, Annika K Weimer, Minyi Shi, Tobias Moll, Jack N G Marshall, Calum Harvey, Helia Ghahremani Nezhad, John Franklin, Cleide Dos Santos Souza and 16 more

Open access · hybridAbstract read
In one paragraph

Article in Neuron, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed, 1 pooled it
14.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 1 synthesis or guideline pooled it, 118 citations in OpenAlex.

  1. A systematic review and functionalFrontiers in neuroscience · 2025
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  5. Target identification and assessment in the era of AI.Nature reviews. Drug discovery · 2026
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  18. Antisense oligonucleotide depletion ofmedRxiv : the preprint server for health sciences · 2025
    Article
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  20. RNAi-mediated silencing of SOD1 profoundly extends survival and functional outcomes in ALS mice.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors at 8 institutions in 6 countries.

Sai ZhangDepartment of Genetics, Center for Genomics and Personalized Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA.
Johnathan Cooper-KnockSheffield Institute for Translational Neuroscience, University of Sheffield, Sheffield, S10 2HQ, UK.
Annika K WeimerDepartment of Genetics, Center for Genomics and Personalized Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA.
Minyi ShiDepartment of Genetics, Center for Genomics and Personalized Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA.
Tobias MollSheffield Institute for Translational Neuroscience, University of Sheffield, Sheffield, S10 2HQ, UK.
Jack N G MarshallSheffield Institute for Translational Neuroscience, University of Sheffield, Sheffield, S10 2HQ, UK.
Calum HarveySheffield Institute for Translational Neuroscience, University of Sheffield, Sheffield, S10 2HQ, UK.
Helia Ghahremani NezhadSheffield Institute for Translational Neuroscience, University of Sheffield, Sheffield, S10 2HQ, UK.
John FranklinSheffield Institute for Translational Neuroscience, University of Sheffield, Sheffield, S10 2HQ, UK.
Cleide Dos Santos SouzaSheffield Institute for Translational Neuroscience, University of Sheffield, Sheffield, S10 2HQ, UK.
Ke NingSheffield Institute for Translational Neuroscience, University of Sheffield, Sheffield, S10 2HQ, UK.
Cheng WangThe Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, the Bakar Computational Health Sciences Institute, the Parker Institute for Cancer Immunotherapy, and the Department of Neurology, School of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.
Jingjing LiThe Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, the Bakar Computational Health Sciences Institute, the Parker Institute for Cancer Immunotherapy, and the Department of Neurology, School of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.
Allison A DilliottDepartment of Neurology and Neurosurgery, the Montreal Neurological Institute, McGill University, Montreal, QC H3A 1A1, Canada.
Sali FarhanDepartment of Neurology and Neurosurgery, the Montreal Neurological Institute, McGill University, Montreal, QC H3A 1A1, Canada.
Eran ElhaikDepartment of Biology, Lunds Universitet, Lund 223 62, Sweden.
Iris PasniceanuSheffield Institute for Translational Neuroscience, University of Sheffield, Sheffield, S10 2HQ, UK.
Matthew R LiveseySheffield Institute for Translational Neuroscience, University of Sheffield, Sheffield, S10 2HQ, UK.
Chen EitanDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Eran HornsteinDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Kevin P KennaDepartment of Neurology, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht 3584 CX, the Netherlands.
Project MinE ALS Sequencing Consortium
Jan H VeldinkDepartment of Neurology, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht 3584 CX, the Netherlands.
Laura FerraiuoloSheffield Institute for Translational Neuroscience, University of Sheffield, Sheffield, S10 2HQ, UK.
Pamela J ShawSheffield Institute for Translational Neuroscience, University of Sheffield, Sheffield, S10 2HQ, UK.
Michael P SnyderDepartment of Genetics, Center for Genomics and Personalized Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA. Electronic address: mpsnyder@stanford.edu.
University of Sheffield · GBUniversity Medical Center Utrecht · NLStanford University · USMontreal Neurological Institute and Hospital · CAUniversity of California, San Francisco · USWeizmann Institute of Science · ILLund University · SEStanford Medicine · US

Funding

PRODUCTION CENTER FOR MAPPING REGULATORY REGIONS OF THE HUMAN GENOMEUM1HG009442 · NHGRI · STANFORD UNIVERSITY · PI SNYDER, MICHAEL P. · 2017 to 2021
$20.1M
Stanford Islet Research CoreP30DK116074 · NIDDK · STANFORD UNIVERSITY · PI Seung K Kim · 2017 to 2026
$19.5M
Special EquipmentP50HG007735 · NHGRI · STANFORD UNIVERSITY · PI CHANG, HOWARD Y · 2014 to 2018
$15.2M
Center for Personal Dynamic RegulomesRM1HG007735 · NHGRI · STANFORD UNIVERSITY · PI CHANG, HOWARD Y · 2019 to 2023
$13.8M
Signature Protein Profiles to Identify AAAsP50HL083800 · NHLBI · STANFORD UNIVERSITY · PI CONNOLLY, ANDREW J · 2006 to 2010
$13.7M
Identification of genes causative for familial ALS gene using exome sequencingR01NS073873 · NINDS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LANDERS, JOHN E · 2011 to 2019
$4.6M
Temporal regulation of BMP signaling in patterning the tracheal cartilage and pharmacological approaches to prevent tracheomalacia (DivSupp)R01HL162939 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MISHINA, YUJI · 2022 to 2025
$1.6M
DNA Variants and AAA DiseaseR01HL101388 · NHLBI · STANFORD UNIVERSITY · PI TSAO, PHILIP S · 2010 to 2013
$1.6M
MicroRNA Regulation of Nicotine Accelerated AAAsR01HL122939 · NHLBI · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI TSAO, PHILIP S · 2014 to 2017
$1.4M
High-throughput sequencer for multi-scale genomic studiesS10OD020141 · OD · STANFORD UNIVERSITY · PI SNYDER, MICHAEL P. · 2015 to 2015
$600k
Computational appliance: a supercomputer for modern biomedical researchS10OD023452 · OD · STANFORD UNIVERSITY · PI DATTA, SOMALEE · 2017 to 2017
$600k
Ultra high throughput sequencer for sustaining and enhancing multi-scale genomic studiesS10OD025212 · OD · STANFORD UNIVERSITY · PI SNYDER, MICHAEL P. · 2018 to 2018
$600k
Medical Research Council G0600974Medical Research Council MR/K008943/1Medical Research Council MR/L501529/1Medical Research Council MR/M010864/1Medical Research Council MR/R024804/1Medical Research Council MR/W00416X/1Motor Neurone Disease Association ALCHALABI-DOBSON/APR14/829-791Motor Neurone Disease Association ALCHALABI-TALBOT/APR14/926-794Motor Neurone Disease Association TURNER/OCT15/972-797NHGRI NIH HHS P50 HG007735NHGRI NIH HHS RM1 HG007735NHGRI NIH HHS UM1 HG009442NHLBI NIH HHS P50 HL083800NHLBI NIH HHS R01 HL101388NHLBI NIH HHS R01 HL122939NHLBI NIH HHS R01 HL162939NIDDK NIH HHS P30 DK116074NIH HHS S10 OD020141NIH HHS S10 OD023452NIH HHS S10 OD025212NINDS NIH HHS R01 NS073873NINDS NIH HHS R56 NS073873Wellcome TrustWellcome Trust 216596/Z/19/Z
6 · The paper itself

Abstract

Amyotrophic lateral sclerosis (ALS) is a complex disease that leads to motor neuron death. Despite heritability estimates of 52%, genome-wide association studies (GWASs) have discovered relatively few loci. We developed a machine learning approach called RefMap, which integrates functional genomics with GWAS summary statistics for gene discovery. With transcriptomic and epigenetic profiling of motor neurons derived from induced pluripotent stem cells (iPSCs), RefMap identified 690 ALS-associated genes that represent a 5-fold increase in recovered heritability. Extensive conservation, transcriptome, network, and rare variant analyses demonstrated the functional significance of candidate genes in healthy and diseased motor neurons and brain tissues. Genetic convergence between common and rare variation highlighted KANK1 as a new ALS gene. Reproducing KANK1 patient mutations in human neurons led to neurotoxicity and demonstrated that TDP-43 mislocalization, a hallmark pathology of ALS, is downstream of axonal dysfunction. RefMap can be readily applied to other complex diseases.

Indexed as

Amyotrophic Lateral SclerosisInduced Pluripotent Stem CellsAdaptor Proteins, Signal TransducingCell DeathCytoskeletal ProteinsGenome-Wide Association StudyHumansMotor NeuronsAdaptor Proteins, Signal TransducingCytoskeletal ProteinsKANK1 protein, humanALSaxonal dysfunctionepigeneticsgene discoverygeneticsiPSCmachine learningmotor neuronsmultiomicsTDP-43 mislocalization

Identifiers

PMID35045337
PMCPMC9017397
OpenAlexW4221081445

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.