Evidence map›Paper›PMID 35045152›Full record

ArticleThe Journal of cell biology2022

A loop extrusion-independent mechanism contributes to condensin I-mediated chromosome shaping.

Kazuhisa Kinoshita, Yuko Tsubota, Shoji Tane, Yuuki Aizawa, Ryota Sakata, Kozo Takeuchi, Keishi Shintomi, Tomoko Nishiyama, Tatsuya Hirano

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
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  7. Reconstitution of genome remodeling usingFrontiers in cell and developmental biology · 2026
    Review
  8. Review
  9. Condensin-Condensin Interactions Facilitate Mitotic Chromosome Assembly in Xenopus Egg Extracts.Genes to cells : devoted to molecular & cellular mechanisms · 2025
    Article
  10. Article
  11. Article
  12. Mitotic genome folding.The Journal of cell biology · 2025
    Review
  13. In through the out door: A loop-binding-first model for topological cohesin loading.BioEssays : news and reviews in molecular, cellular and developmental biology · 2024
    Article
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Kazuhisa KinoshitaChromosome Dynamics Laboratory, RIKEN, Wako, Saitama, Japan.ORCID 0000-0002-0882-4296
Yuko TsubotaDivision of Biological Sciences, Graduate School of Science, Nagoya University, Nagoya, Japan.ORCID 0000-0002-7479-2747
Shoji TaneChromosome Dynamics Laboratory, RIKEN, Wako, Saitama, Japan.
Yuuki AizawaChromosome Dynamics Laboratory, RIKEN, Wako, Saitama, Japan.
Ryota SakataDivision of Biological Sciences, Graduate School of Science, Nagoya University, Nagoya, Japan.ORCID 0000-0001-7481-5710
Kozo TakeuchiChromosome Dynamics Laboratory, RIKEN, Wako, Saitama, Japan.
Keishi ShintomiChromosome Dynamics Laboratory, RIKEN, Wako, Saitama, Japan.ORCID 0000-0003-0484-9901
Tomoko NishiyamaDivision of Biological Sciences, Graduate School of Science, Nagoya University, Nagoya, Japan.
Tatsuya HiranoChromosome Dynamics Laboratory, RIKEN, Wako, Saitama, Japan.ORCID 0000-0002-4219-6473
RIKEN · JPNagoya University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Condensin I is a five-subunit protein complex that is central to mitotic chromosome assembly in eukaryotic cells. Despite recent progress, its molecular mechanisms of action remain to be fully elucidated. By using Xenopus egg extracts as a functional assay, we find that condensin I complexes harboring mutations in its kleisin subunit CAP-H produce chromosomes with confined axes in the presence of topoisomerase IIα (topo IIα) and highly compact structures (termed "beans") with condensin-positive central cores in its absence. The bean phenotype depends on the SMC ATPase cycle and can be reversed by subsequent addition of topo IIα. The HEAT repeat subunit CAP-D2, but not CAP-G, is essential for the bean formation. Notably, loop extrusion activities of the mutant complexes cannot explain the chromosomal defects they exhibit in Xenopus egg extracts, implying that a loop extrusion-independent mechanism contributes to condensin I-mediated chromosome assembly and shaping. We provide evidence that condensin-condensin interactions underlie these processes.

Indexed as

Adenosine TriphosphatasesAmino Acid MotifsAnimalsChromosomal Proteins, Non-HistoneChromosomesDNA-Binding ProteinsDNA Topoisomerases, Type IIHumansMiceMultiprotein ComplexesMutationPhenotypeProtein Structure, SecondaryStructure-Activity RelationshipXenopusAdenosine TriphosphatasesChromosomal Proteins, Non-Histonecondensin complexesDNA-Binding ProteinsDNA Topoisomerases, Type IIMultiprotein ComplexesSMC4 protein, mouse

Identifiers

PMID35045152
PMCPMC8932526
OpenAlexW4205703348

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.