Evidence map›Paper›PMID 35043075›Full record

ArticleACS medicinal chemistry letters2022

Design and Evaluation of Bispidine-Based SARS-CoV-2 Main Protease Inhibitors.

Dmitriy Shcherbakov, Dmitriy Baev, Mikhail Kalinin, Alexander Dalinger, Varvara Chirkova, Svetlana Belenkaya, Aleksei Khvostov, Dmitry Krut'ko, Aleksei Medved'ko, Ekaterina Volosnikova and 7 more

Abstract read
In one paragraph

Article in ACS medicinal chemistry letters, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

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  10. Synthesis of conjugates of (aRussian chemical bulletin = Izvestiia Akademii nauk. Seriia khimicheskaia · 2023
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  11. Synthesis of non-symmetricRussian chemical bulletin = Izvestiia Akademii nauk. Seriia khimicheskaia · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Dmitriy ShcherbakovState Research Center of Virology and Biotechnology VECTOR, Rospotrebnadzor, 630559, Russia, Koltsovo, Novosibirsk Region, Russian Federation.
Dmitriy BaevN.N. Vorozhtsov Novosibirsk Institute of Organic chemistry SB RAS, Lavrent'ev av., 630090, Russia, Novosibirsk, Russian Federation.
Mikhail KalininN.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninski pr., 47, 119991 Moscow, Russian Federation.
Alexander DalingerDepartment of Chemistry, M.V. Lomonosov Moscow State University, Leninskie Gory, 1-3, 119991 Moscow, Russian Federation.
Varvara ChirkovaAltay State University, 656049, Barnaul, Leninski pr. 61, Russian Federation.
Svetlana BelenkayaState Research Center of Virology and Biotechnology VECTOR, Rospotrebnadzor, 630559, Russia, Koltsovo, Novosibirsk Region, Russian Federation.
Aleksei KhvostovDepartment of Chemistry, M.V. Lomonosov Moscow State University, Leninskie Gory, 1-3, 119991 Moscow, Russian Federation.
Dmitry Krut'koDepartment of Chemistry, M.V. Lomonosov Moscow State University, Leninskie Gory, 1-3, 119991 Moscow, Russian Federation.
Aleksei Medved'koN.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninski pr., 47, 119991 Moscow, Russian Federation.ORCID https://orcid.org/0000-0002-8731-6934
Ekaterina VolosnikovaState Research Center of Virology and Biotechnology VECTOR, Rospotrebnadzor, 630559, Russia, Koltsovo, Novosibirsk Region, Russian Federation.
Elena SharlaevaAltay State University, 656049, Barnaul, Leninski pr. 61, Russian Federation.
Daniil ShanshinState Research Center of Virology and Biotechnology VECTOR, Rospotrebnadzor, 630559, Russia, Koltsovo, Novosibirsk Region, Russian Federation.
Tatyana TolstikovaN.N. Vorozhtsov Novosibirsk Institute of Organic chemistry SB RAS, Lavrent'ev av., 630090, Russia, Novosibirsk, Russian Federation.
Olga YarovayaN.N. Vorozhtsov Novosibirsk Institute of Organic chemistry SB RAS, Lavrent'ev av., 630090, Russia, Novosibirsk, Russian Federation.ORCID https://orcid.org/0000-0002-2333-4893
Rinat MaksyutovState Research Center of Virology and Biotechnology VECTOR, Rospotrebnadzor, 630559, Russia, Koltsovo, Novosibirsk Region, Russian Federation.
Nariman SalakhutdinovN.N. Vorozhtsov Novosibirsk Institute of Organic chemistry SB RAS, Lavrent'ev av., 630090, Russia, Novosibirsk, Russian Federation.
Sergey VatsadzeN.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninski pr., 47, 119991 Moscow, Russian Federation.ORCID https://orcid.org/0000-0001-7884-8579

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

For the first time, derivatives of 3,7-diazabicyclo[3.3.1]nonane (bispidine) were proposed as potential inhibitors of the SARS-CoV-2 main viral protease (3-chymotrypsin-like, 3CLpro). Based on the created pharmacophore model of the active site of the protease, a group of compounds were modeled and tested for activity against 3CLpro. The 3CLpro activity was measured using the fluorogenic substrate Dabcyl-VNSTLQSGLRK(FAM)MA; the efficiency of the proposed approach was confirmed by comparison with literature data for ebselen and disulfiram. The results of the experiments performed with bispidine compounds showed that 14 compounds exhibited activity in the concentration range 1-10 μM, and 3 samples exhibited submicromolar activity. The structure-activity relationship studies showed that the molecules containing a carbonyl group in the ninth position of the bicycle exhibited the maximum activity. Based on the experimental and theoretical results obtained, further directions for the development of this topic were proposed.

Identifiers

PMID35043075
PMCPMC8491553

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.