ArticleJournal of computational biology : a journal of computational molecular cell biology2022
MONI: A Pangenomic Index for Finding Maximal Exact Matches.
Article in Journal of computational biology : a journal of computational molecular cell biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.
What it found
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The trial behind it
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Who cites it
46 citing papers in PubMed.
- Movi 2: fast and space-efficient queries on pangenomes.Bioinformatics (Oxford, England) · 2026Article
- RLBWT-based LCP computation in compressed space for terabase-scale pangenome analysis.Bioinformatics (Oxford, England) · 2026Article
- Building genomic data structures from compressed representations using prefix-free parsing.Genome research · 2026Review
- RLBWT-Based LCP Computation in Compressed Space for Terabase-Scale Pangenome Analysis.bioRxiv : the preprint server for biology · 2026Article
- Col-BWT: Pangenomic Seed Chaining with Maximal Matches Improves Read Classification.Journal of computational biology : a journal of computational molecular cell biology · 2026Article
- Prefix-free parsing for merging big BWTs.International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium) · 2026Article
- Suffixient Arrays: A New Efficient Suffix Array Compression Technique.Theory of computing systems · 2026Article
- Article
- Columba: fast approximate pattern matching with optimized search schemes.Bioinformatics (Oxford, England) · 2025Article
- b-move: faster lossless approximate pattern matching in a run-length compressed index.Algorithms for molecular biology : AMB · 2025Article
- Accurate short-read alignment throughGenome research · 2025Article
- A survey of sequence-to-graph mapping algorithms in the pangenome era.Genome biology · 2025Review
- Mem-based pangenome indexing for k-mer queries.Algorithms for molecular biology : AMB · 2025Article
- Haplotype Matching with GBWT for Pangenome Graphs.bioRxiv : the preprint server for biology · 2025Article
- Taming large-scale genomic analyses via sparsified genomics.Nature communications · 2025Article
- An Efficient Data Structure and Algorithm for Long-Match Query in Run-Length Compressed BWT.Algorithms in bioinformatics : ... International Workshop, WABI ..., proceedings. WABI (Workshop) · 2025Article
- K2R: Tinted de Bruijn graphs implementation for efficient read extraction from sequencing datasets.Bioinformatics advances · 2025Article
- Movi Color: fast and accurate taxonomic classification with the move structure.ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine · 2025Article
- Movi: A fast and cache-efficient full-text pangenome index.iScience · 2024Article
- Differential quantification of alternative splicing events on spliced pangenome graphs.PLoS computational biology · 2024Article
Corrections and comments
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Authors and funding
5 authors.
Funding
Abstract
Recently, Gagie et al. proposed a version of the FM-index, called the
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.