ArticleMolecular genetics and genomics : MGG2022
Genetic diversity and population structure of rice (Oryza sativa L.) landraces from Kerala, India analyzed through genotyping-by-sequencing.
Article in Molecular genetics and genomics : MGG, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.
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Who cites it
5 citing papers in PubMed, 14 citations in OpenAlex.
- Multi-locus genome-wide association studies reveal genomic regions associated with sodicity tolerance in rice.Plant molecular biology · 2025Article
- Genetic diversity and population structure of superior shea trees (Vitellaria paradoxa subsp. paradoxa) using SNP markers for the establishment of a core collection in Côte d'Ivoire.BMC plant biology · 2024Article
- Exploring genetic diversity and population structure inFrontiers in plant science · 2024Article
- Genetic potential of grain-related traits in rice landraces: phenomics and multi-locus association analyses.Molecular biology reports · 2023Article
- High-resolution quantitative trait locus mapping for rice grain quality traits using genotyping by sequencing.Frontiers in plant science · 2022Article
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Authors and funding
4 authors at 1 institution in 1 country.
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Abstract
Researchers stand at the vanguard of advancement and application of next-generation sequencing technology for developing dominant strategies for the sustainable management of genetically diverse crops. We attempt to fill the existing research lacuna in the molecular characterization of potent rice landraces in Kerala. Genotyping-by-sequencing (GBS) was performed on 96 Kerala rice accessions to identify single-nucleotide polymorphisms (SNPs), to examine the genetic diversity, population structure, and to delineate linkage disequilibrium (LD) pattern. GBS identified 5856 high-quality SNPs. The structure analysis indicated three subpopulations with the highest probability for population clustering with significant genetic differentiation, confirmed by principal component analysis. The genome-wide LD decay distance was 772 kb, at which the r
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