Evidence map›Paper›PMID 35039603›Full record

ArticleScientific reports2022

Comparative chloroplast genome analyses of cultivated spinach and two wild progenitors shed light on the phylogenetic relationships and variation.

Hongbing She, Zhiyuan Liu, Zhaosheng Xu, Helong Zhang, Feng Cheng, Jian Wu, Xiaowu Wang, Wei Qian

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. The complete chloroplast genome of the salt-tolerant plantMitochondrial DNA. Part B, Resources · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Hongbing SheInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Zhiyuan LiuInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Zhaosheng XuInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Helong ZhangInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Feng ChengInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Jian WuInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Xiaowu WangInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Wei QianInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China. qianwei@caas.cn.
Chinese Academy of Agricultural Sciences · CNInstitute of Vegetables and Flowers · CN

Funding

Beijing Scientific Program of Municipal Commission of Science and Technology Z171100001517014Central Public-interest Scientific Institution Basal Research Fund IVF-BRF2018004Chinese Academy of Agricultural Sciences Innovation Project CAAS-ASTIP-IVFCAASNational Key Research and Development Program of China 2018YFD0100805Natural Science Foundation of China 31872102
6 · The paper itself

Abstract

Spinacia is a genus of important leafy vegetable crops worldwide and includes cultivated Spinacia oleracea and two wild progenitors, Spinacia turkestanica and Spinacia tetrandra. However, the chloroplast genomes of the two wild progenitors remain unpublished, limiting our knowledge of chloroplast genome evolution among these three Spinacia species. Here, we reported the complete chloroplast genomes of S. oleracea, S. turkestanica, and S. tetrandra obtained via Illumina sequencing. The three chloroplast genomes exhibited a typical quadripartite structure and were 150,739, 150,747, and 150,680 bp in size, respectively. Only three variants were identified between S. oleracea and S. turkestanica, whereas 690 variants were obtained between S. oleracea and S. tetrandra, strongly demonstrating the close relationship between S. turkestanica and S. oleracea. This was further supported by phylogenetic analysis. We reported a comprehensive variant dataset including 503 SNPs and 83 Indels using 85 Spinacia accessions containing 61 S. oleracea, 16 S. turkestanica, and eight S. tetrandra accessions. Thirteen S. oleracea accessions were derived through introgression from S. turkestanica that acts as the maternal parent. Together, these results provide a valuable resource for spinach breeding programs and improve our understanding of the phylogenetic relationships within Amaranthaceae.

Indexed as

PhylogenyChloroplastsGenetic VariationGenome, ChloroplastGenome, PlantGenomicsHigh-Throughput Nucleotide SequencingPlant BreedingSpinacia oleracea

Identifiers

PMID35039603
PMCPMC8763918
OpenAlexW4206260462

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.