Evidence map›Paper›PMID 35038994›Full record

ArticleBMC neuroscience2022

Diagnosis of schizophrenia with functional connectome data: a graph-based convolutional neural network approach.

Kang-Han Oh, Il-Seok Oh, Uyanga Tsogt, Jie Shen, Woo-Sung Kim, Congcong Liu, Nam-In Kang, Keon-Hak Lee, Jing Sui, Sung-Wan Kim and 1 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in BMC neuroscience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 2 pooled it
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 2 syntheses or guidelines pooled it, 18 citations in OpenAlex.

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  10. The future of diagnosis in clinical neurosciences: Comparing multiple sclerosis and schizophrenia.European psychiatry : the journal of the Association of European Psychiatrists · 2023
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Kang-Han OhDepartment of Computer and Software Engineering, Wonkwang University, Iksan, 54538, Korea.
Il-Seok OhDepartment of Computer Science and Engineering, Jeonbuk National University, Jeonju, Korea.
Uyanga TsogtDepartment of Psychiatry, Jeonbuk National University, Medical School, Geonjiro 20, Jeonju, Korea.
Jie ShenDepartment of Psychiatry, Jeonbuk National University, Medical School, Geonjiro 20, Jeonju, Korea.
Woo-Sung KimDepartment of Psychiatry, Jeonbuk National University, Medical School, Geonjiro 20, Jeonju, Korea.
Congcong LiuDepartment of Psychiatry, Jeonbuk National University, Medical School, Geonjiro 20, Jeonju, Korea.
Nam-In KangDepartment of Psychiatry, Maeumsarang Hospital, Wanju, Jeollabuk-do, Korea.
Keon-Hak LeeDepartment of Psychiatry, Maeumsarang Hospital, Wanju, Jeollabuk-do, Korea.
Jing SuiBrainnetome Center and National Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences, Beijing, 100190, China.
Sung-Wan KimDepartment of Psychiatry, Chonnam National University Medical School, Gwangju, Republic of Korea.
Young-Chul ChungDepartment of Psychiatry, Jeonbuk National University, Medical School, Geonjiro 20, Jeonju, Korea. chungyc@jbnu.ac.kr.
Jeonbuk National University · KRMaeumsarang Hospital · KRCenter for Excellence in Brain Science and Intelligence Technology · CNChonnam National University · KRWonkwang University · KR

Funding

Data-driven approaches to identify biomarkers from multimodal imaging big dataR01MH117107 · NIMH · GEORGIA STATE UNIVERSITY · PI CALHOUN, VINCE D · 2019 to 2022
$1.6M
NIMH NIH HHS R01 MH117107
6 · The paper itself

Abstract

Previous deep learning methods have not captured graph or network representations of brain structural or functional connectome data. To address this, we developed the BrainNet-Global Covariance Pooling-Attention Convolutional Neural Network (BrainNet-GA CNN) by incorporating BrainNetCNN and global covariance pooling into the self-attention mechanism. Resting-state functional magnetic resonance imaging data were obtained from 171 patients with schizophrenia spectrum disorders (SSDs) and 161 healthy controls (HCs). We conducted an ablation analysis of the proposed BrainNet-GA CNN and quantitative performance comparisons with competing methods using the nested tenfold cross validation strategy. The performance of our model was compared with competing methods. Discriminative connections were visualized using the gradient-based explanation method and compared with the results obtained using functional connectivity analysis. The BrainNet-GA CNN showed an accuracy of 83.13%, outperforming other competing methods. Among the top 10 discriminative connections, some were associated with the default mode network and auditory network. Interestingly, these regions were also significant in the functional connectivity analysis. Our findings suggest that the proposed BrainNet-GA CNN can classify patients with SSDs and HCs with higher accuracy than other models. Visualization of salient regions provides important clinical information. These results highlight the potential use of the BrainNet-GA CNN in the diagnosis of schizophrenia.

Indexed as

ConnectomeSchizophreniaBrainHumansMagnetic Resonance ImagingNeural Networks, ComputerBrain networkConvolutional neural networkFunctional connectomeGlobal covariance poolingSchizophreniaSelf-attention mechanism

Identifiers

PMID35038994
PMCPMC8764800
OpenAlexW4226192669

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.