Evidence map›Paper›PMID 35038453›Full record

ArticleThe Journal of biological chemistry2022

Structural basis of cyclic oligoadenylate binding to the transcription factor Csa3 outlines cross talk between type III and type I CRISPR systems.

Pengjun Xia, Anirudha Dutta, Kushol Gupta, Mona Batish, Vijay Parashar

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Pengjun XiaDepartment of Biological Sciences, University of Delaware, Newark, Delaware, USA.
Anirudha DuttaDepartment of Medical and Molecular Sciences, University of Delaware, Newark, Delaware, USA.
Kushol GuptaThe Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Mona BatishDepartment of Biological Sciences, University of Delaware, Newark, Delaware, USA; Department of Medical and Molecular Sciences, University of Delaware, Newark, Delaware, USA.
Vijay ParasharDepartment of Biological Sciences, University of Delaware, Newark, Delaware, USA; Department of Medical and Molecular Sciences, University of Delaware, Newark, Delaware, USA. Electronic address: parashar@udel.edu.
University of Delaware · USUniversity of Pennsylvania · US

Funding

Structural biology of c-di-AMP signaling in Gram-positive bacteriaR35GM119504 · NIGMS · UNIVERSITY OF DELAWARE · PI PARASHAR, VIJAY KUMAR · 2016 to 2020
$1.6M
A Pixel Array Detector System for Small Angle X-ray ScatteringS10OD018483 · OD · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI CLASSEN, SCOTT · 2014 to 2014
$998k
NIGMS NIH HHS R35 GM119504NIH HHS S10 OD018483
6 · The paper itself

Abstract

RNA interference by type III CRISPR systems results in the synthesis of cyclic oligoadenylate (cOA) second messengers, which are known to bind and regulate various CARF domain-containing nuclease receptors. The CARF domain-containing Csa3 family of transcriptional factors associated with the DNA-targeting type I CRISPR systems regulate expression of various CRISPR and DNA repair genes in many prokaryotes. In this study, we extend the known receptor repertoire of cOA messengers to include transcriptional factors by demonstrating specific binding of cyclic tetra-adenylate (cA4) to Saccharolobus solfataricus Csa3 (Csa3

Indexed as

Adenine NucleotidesClustered Regularly Interspaced Short Palindromic RepeatsOligoribonucleotidesCRISPR-Cas SystemsDNAModels, MolecularStructure-Activity RelationshipTranscription Factors2',5'-oligoadenylateAdenine NucleotidesDNAOligoribonucleotidesTranscription Factorsanalytical ultracentrifugationCARF domainCRISPRcyclic oligoadenylatesmall-angle X-ray scatteringtranscription factor

Identifiers

PMID35038453
PMCPMC8844856
OpenAlexW4205861363

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.