Evidence map›Paper›PMID 35037254›Full record

ArticleThe New phytologist2022

A novel panel of yeast assays for the assessment of thiamin and its biosynthetic intermediates in plant tissues.

Simon Strobbe, Jana Verstraete, Teresa B Fitzpatrick, Maria Faustino, Tiago F Lourenço, M Margarida Oliveira, Christophe Stove, Dominique Van Der Straeten

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. TaTHI2 interacts with CaPlant biotechnology journal · 2024
    Article
  4. Article
  5. Frontiers in plant science · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Simon StrobbeLaboratory of Functional Plant Biology, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, B-9000, Gent, Belgium.ORCID 0000-0003-0583-9406
Jana VerstraeteLaboratory of Toxicology, Department of Bioanalysis, Ghent University, Ottergemsesteenweg 460, B-9000, Gent, Belgium.ORCID 0000-0002-2004-0312
Teresa B FitzpatrickVitamins and Environmental Stress Responses in Plants, Department of Botany and Plant Biology, University of Geneva, Quai E. Ansermet 30, 1211, Geneva, Switzerland.ORCID 0000-0001-7694-5631
Maria FaustinoInstituto de Tecnologia Química e Biológica António Xavier, Universidade NOVA de Lisboa, Plant Functional Genomics - GPlantS Lab, Av. da República, 2780-157, Oeiras, Portugal.ORCID 0000-0003-3131-3192
Tiago F LourençoInstituto de Tecnologia Química e Biológica António Xavier, Universidade NOVA de Lisboa, Plant Functional Genomics - GPlantS Lab, Av. da República, 2780-157, Oeiras, Portugal.ORCID 0000-0001-5085-861X
M Margarida OliveiraInstituto de Tecnologia Química e Biológica António Xavier, Universidade NOVA de Lisboa, Plant Functional Genomics - GPlantS Lab, Av. da República, 2780-157, Oeiras, Portugal.ORCID 0000-0002-0095-1952
Christophe StoveLaboratory of Toxicology, Department of Bioanalysis, Ghent University, Ottergemsesteenweg 460, B-9000, Gent, Belgium.ORCID 0000-0001-7126-348X
Dominique Van Der StraetenLaboratory of Functional Plant Biology, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, B-9000, Gent, Belgium.ORCID 0000-0002-7755-1420
Ghent University · BEUniversidade Nova de Lisboa · PTUniversity of Geneva · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thiamin (or thiamine), known as vitamin B1, represents an indispensable component of human diets, being pivotal in energy metabolism. Thiamin research depends on adequate vitamin quantification in plant tissues. A recently developed quantitative liquid chromatography-tandem mass spectrometry (LC-MS/MS) method is able to assess the level of thiamin, its phosphorylated entities and its biosynthetic intermediates in the model plant Arabidopsis thaliana, as well as in rice. However, their implementation requires expensive equipment and substantial technical expertise. Microbiological assays can be useful in deter-mining metabolite levels in plant material and provide an affordable alternative to MS-based analysis. Here, we evaluate, by comparison to the LC-MS/MS reference method, the potential of a carefully chosen panel of yeast assays to estimate levels of total vitamin B1, as well as its biosynthetic intermediates pyrimidine and thiazole in Arabidopsis samples. The examined panel of Saccharomyces cerevisiae mutants was, when implemented in microbiological assays, capable of correctly assigning a series of wild-type and thiamin biofortified Arabidopsis plant samples. The assays provide a readily applicable method allowing rapid screening of vitamin B1 (and its biosynthetic intermediates) content in plant material, which is particularly useful in metabolic engineering approaches and in germplasm screening across or within species.

Indexed as

ArabidopsisThiamineChromatography, LiquidSaccharomyces cerevisiaeTandem Mass SpectrometryThiaminebiofortificationmetabolic engineeringmicrobiological assaysnutritional improvementSaccharomyces cerevisiaeturbidimetryvitamin quantification

Identifiers

PMID35037254
PMCPMC9303440
OpenAlexW4206122661

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.