Evidence map›Paper›PMID 35037225›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

AgroLD: A Knowledge Graph Database for Plant Functional Genomics.

Pierre Larmande, Gildas Tagny Ngompe, Aravind Venkatesan, Manuel Ruiz

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Pierre LarmandeDIADE, IRD, CIRAD, Univ. Montpellier, Montpellier, France. pierre.larmande@ird.fr.
Gildas Tagny NgompeFrench Institute of Bioinformatics (IFB)-South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier, France.
Aravind VenkatesanEMBL-EBI, Wellcome Genome Campus, Cambridgeshire, UK.
Manuel RuizFrench Institute of Bioinformatics (IFB)-South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent advances in high-throughput technologies have resulted in tremendous increase in the amount of data in the agronomic domain. There is an urgent need to effectively integrate complementary information to understand the biological system in its entirety. We have developed AgroLD, a knowledge graph that exploits the Semantic Web technology and some of the relevant standard domain ontologies, to integrate information on plant species and in this way facilitating the formulation of new scientific hypotheses. This chapter outlines some integration results of the project, which initially focused on genomics, proteomics and phenomics.

Indexed as

GenomicsPattern Recognition, AutomatedDatabases, FactualPlantsProteomicsDatabaseFunctional GenomicsGene annotationKnowledge graphsSemantic Web

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.