Evidence map›Paper›PMID 35037203›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

CerealsDB: A Whistle-Stop Tour of an Open Access SNP Resource.

Mark Winfield, Paul Wilkinson, Amanda Burridge, Alexandra Allen, Jane Coghill, Christy Waterfall, Keith Edwards, Gary Barker

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Mark WinfieldSchool of Biological Sciences, University of Bristol, Bristol, UK. mark.winfield@bristol.ac.uk.
Paul WilkinsonDepartment of Functional and Comparative Genomics, Faculty of Health and Life Sciences, University of Liverpool, Liverpool, UK.
Amanda BurridgeSchool of Biological Sciences, University of Bristol, Bristol, UK.
Alexandra AllenSchool of Biological Sciences, University of Bristol, Bristol, UK.
Jane CoghillSchool of Biological Sciences, University of Bristol, Bristol, UK.
Christy WaterfallSchool of Biological Sciences, University of Bristol, Bristol, UK.
Keith EdwardsSchool of Biological Sciences, University of Bristol, Bristol, UK.
Gary BarkerSchool of Biological Sciences, University of Bristol, Bristol, UK.

Funding

Biotechnology and Biological Sciences Research Council BBS/E/C/000I0210Biotechnology and Biological Sciences Research Council BBS/E/C/000I0280Biotechnology and Biological Sciences Research Council BBS/E/J/000PR9782Biotechnology and Biological Sciences Research Council BBS/E/T/000PR9783
6 · The paper itself

Abstract

The CerealsDB website, created by members of the Functional Genomics Group at the University of Bristol, provides access to a database containing SNP and genotyping data for hexaploid wheat and, to a lesser extent, its progenitors and several of its relatives. The site is principally aimed at plant breeders and research scientists who wish to obtain information regarding SNP markers; for example, obtain primers used for their identification or the sequences upon which they are based. The database underpinning the website contains circa one million putative varietal SNPs of which several hundreds of thousands have been experimentally validated on a range of common genotyping platforms. For each SNP marker, the site also hosts the allelic scores for thousands of elite wheat varieties, landrace cultivars, and wheat relatives. Tools are available to help negotiate and visualize the datasets. The website has been designed to be simple and straightforward to use and is completely open access.

Indexed as

Polymorphism, Single NucleotideGenome, PlantGenomicsTriticumDatabasePhylogenyQTLSingle nucleotide polymorphismsSNPsWheat

Identifiers

PMID35037203

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.