Evidence map›Paper›PMID 35033572›Full record

ArticleAntiviral research2022

Very low levels of remdesivir resistance in SARS-COV-2 genomes after 18 months of massive usage during the COVID19 pandemic: A GISAID exploratory analysis.

Daniele Focosi, Fabrizio Maggi, Scott McConnell, Arturo Casadevall

Open access · greenAbstract read
In one paragraph

Article in Antiviral research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
6.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 63 citations in OpenAlex.

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  12. Structural and virologic mechanism of the emergence of resistance to MProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Article
  14. Review
  15. COVID-19 therapeutics.Clinical microbiology reviews · 2024
    Review
  16. Article
  17. Article
  18. Review: The Landscape of Antiviral Therapy for COVID-19 in the Era of Widespread Population Immunity and Omicron-Lineage Viruses.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2024
    Review
  19. Article
  20. SARS-CoV-2 genomics and impact on clinical care for COVID-19.The Journal of antimicrobial chemotherapy · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Daniele FocosiNorth-Western Tuscany Blood Bank, Pisa University Hospital, Pisa, Italy. Electronic address: daniele.focosi@gmail.com.
Fabrizio MaggiDepartment of Medicine and Surgery, University of Insubria, Varese, Italy; Laboratory of Microbiology, ASST Sette Laghi, Varese, Italy. Electronic address: fabrizio.maggi63@gmail.com.
Scott McConnellDepartment of Medicine, Johns Hopkins School of Public Health and School of Medicine, Baltimore, MD, USA. Electronic address: smcconn8@jhu.edu.
Arturo CasadevallDepartment of Medicine, Johns Hopkins School of Public Health and School of Medicine, Baltimore, MD, USA. Electronic address: acasade1@jhu.edu.
Johns Hopkins University · USUniversity of Insubria · ITUniversity of Pisa · IT

Funding

Training: Molecular & Cellular Bases of Infectious DiseasesT32AI007417 · NIAID · JOHNS HOPKINS UNIVERSITY · PI Arturo Casadevall · 1994 to 2026
$11.9M
NIAID NIH HHS T32 AI007417
6 · The paper itself

Abstract

Massive usage of antiviral compounds during a pandemic creates an ideal ground for emergence of resistant strains. Remdesivir, a broad-spectrum inhibitor of the viral RNA-dependent RNA polymerase (RdRp), was extensively prescribed under emergency use authorization during the first 18 months of the COVID19 pandemic, before randomized controlled trials showed poor efficacy in hospitalized patients. RdRp mutations conferring resistance to remdesivir are well known from in vitro studies, and the huge SARS-CoV-2 sequencing effort during the ongoing COVID19 pandemic represents an unprecedented opportunity to assess emergence and fitness of antiviral resistance in vivo. We mined the GISAID database to extrapolate the frequency of remdesivir escape mutations. Our analysis reveals very low levels of remdesivir resistance worldwide despite massive usage.

Indexed as

COVID-19 Drug TreatmentAdenosine MonophosphateAlanineAntiviral AgentsDrug RepositioningDrug Resistance, ViralGenome, ViralHumansPolyproteinsRNA-Dependent RNA PolymeraseSARS-CoV-2Viral ProteinsAdenosine MonophosphateAlanineAntiviral AgentsORF1ab polyprotein, SARS-CoV-2PolyproteinsremdesivirRNA-Dependent RNA PolymeraseViral ProteinsCOVID-19E802DMolnupiravirNsp12RemdesivirResistanceRNA-Dependent RNA polymeraseSARS-CoV-2

Identifiers

PMID35033572
PMCPMC8755559
OpenAlexW4206719812

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.