Evidence map›Paper›PMID 35033200›Full record

ArticleClinical epigenetics2022

Epigenome-wide association study of lung function in Latino children and youth with asthma.

Esther Herrera-Luis, Annie Li, Angel C Y Mak, Javier Perez-Garcia, Jennifer R Elhawary, Sam S Oh, Donglei Hu, Celeste Eng, Kevin L Keys, Scott Huntsman and 5 more

Open access · goldAbstract read
In one paragraph

Article in Clinical epigenetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Omics approaches in asthma research: Challenges and opportunities.Chinese medical journal pulmonary and critical care medicine · 2024
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Epigenome-wide association studies of allergic disease and the environment.The Journal of allergy and clinical immunology · 2023
    Review
  11. Article
  12. Article
  13. Epigenetics of asthma-the field continues to evolve.Annals of translational medicine · 2022
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 3 countries.

Esther Herrera-Luis *Genomics and Health Group, Department of Biochemistry, Microbiology, Cell Biology and Genetics, Universidad de La Laguna, Apartado 456, 38200, San Cristóbal de La Laguna, Santa Cruz de Tenerife, Spain.
Annie Li *Department of Medicine, University of California San Francisco, San Francisco, CA, USA.
Angel C Y MakDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Javier Perez-GarciaGenomics and Health Group, Department of Biochemistry, Microbiology, Cell Biology and Genetics, Universidad de La Laguna, Apartado 456, 38200, San Cristóbal de La Laguna, Santa Cruz de Tenerife, Spain.
Jennifer R ElhawaryDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Sam S OhDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Donglei HuDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Celeste EngDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Kevin L KeysDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Scott HuntsmanDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Kenneth B BeckmanUMN Genomics Center, Minneapolis, MN, USA.
Luisa N BorrellDepartment of Epidemiology and Biostatistics, Graduate School of Public Health and Health Policy, City University of New York, New York, NY, USA.
Jose Rodriguez-SantanaCentro de Neumología Pediátrica, San Juan, PR, USA.
Esteban G Burchard *Department of Medicine, University of California San Francisco, San Francisco, CA, USA.
Maria Pino-Yanes *Genomics and Health Group, Department of Biochemistry, Microbiology, Cell Biology and Genetics, Universidad de La Laguna, Apartado 456, 38200, San Cristóbal de La Laguna, Santa Cruz de Tenerife, Spain. mdelpino@ull.edu.es.ORCID 0000-0003-0332-437X
University of California, San Francisco · USUniversidad de La Laguna · ESCentro de Neumologia Pediatrica · PRCity University of New York · US

Funding

New York Center for Collaborative Research In Common Disease Genomics: Genome Aggregation and Joint Variant Calling for CCDG Freeze2UM1HG008901 · NHGRI · NEW YORK GENOME CENTER · PI MANIATIS, THOMAS P, WIGLER, MICHAEL H · 2016 to 2020
$56.6M
Studies of Rare Genetic Variation in the Isolated Population of SardiniaR01HL117626 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABECASIS, GONCALO · 2013 to 2016
$10.5M
The Airway Functional Genomics of Bronchodilator Drug Response in Minority Children with AsthmaR01HL117004 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AHITUV, NADAV, SEIBOLD, MAX A · 2013 to 2022
$9.3M
Rare variants and NHLBI traits in deeply phenotyped cohortsR01HL120393 · NHLBI · UNIVERSITY OF WASHINGTON · PI PSATY, BRUCE M, RICE, KENNETH M. · 2014 to 2016
$8.9M
Rare variants and NHLBI traits in deeply phenotyped cohortsU01HL120393 · NHLBI · UNIVERSITY OF WASHINGTON · PI PSATY, BRUCE M, RICE, KENNETH M. · 2017 to 2018
$5.6M
Gene-environments and Admixture in Latino Asthmatics (GALA 2)R01ES015794 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURCHARD, ESTEBAN GONZALEZ · 2008 to 2012
$5.4M
NHGRI Genome Sequencing Program Coordinating CenterU24HG008956 · NHGRI · RUTGERS, THE STATE UNIV OF N.J. · PI BUYSKE, STEVEN G, MATISE, TARA C. · 2016 to 2020
$4.9M
Transcriptomic and Pharmacogenetic Asthma Endotypes in Minority ChildrenR01HL135156 · NHLBI · NATIONAL JEWISH HEALTH · PI SEIBOLD, MAX A, ZIV, ELAD · 2017 to 2021
$4.1M
Genes, air pollution, and asthma severity in minority childrenR01MD010443 · NIMHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SEIBOLD, MAX A, ZIV, ELAD · 2016 to 2020
$3.8M
Genetic Control of Airway Epithelium Gene Expression in Childhood AsthmaticsR01HL128439 · NHLBI · NATIONAL JEWISH HEALTH · PI SEIBOLD, MAX A · 2015 to 2019
$3.1M
Gene-Environment Analyses of Early Life Exposures and Asthma in Ethnically Diverse ChildrenR21ES024844 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURCHARD, ESTEBAN GONZALEZ, GAUDERMAN, WILLIAM JAMES · 2015 to 2017
$509k
Epigenetics of Socio-Environmental Effects on Asthma in MinoritiesR56MD013312 · NIMHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURCHARD, ESTEBAN GONZALEZ, ZAITLEN, NOAH A · 2018 to 2018
$458k
alfred p. sloan foundation 2013-10-27gordon and betty moore foundation GBMF3834ministerio de ciencia e innovación PID2020-116274RB-I00ministerio de ciencia e innovación PRE2018-083837ministerio de ciencia e innovación RYC-2015-17205ministerio de ciencia e innovación SAF2017-83417RNHGRI NIH HHS U24 HG008956NHGRI NIH HHS UM1 HG008901NHLBI NIH HHS 3R01HL117004-01S3NHLBI NIH HHS 3R01HL-117626-02S1NHLBI NIH HHS HHSN268201600032INHLBI NIH HHS R01 HL117004NHLBI NIH HHS R01 HL117626NHLBI NIH HHS R01 HL120393NHLBI NIH HHS R01 HL128439NHLBI NIH HHS R01 HL135156NHLBI NIH HHS R01HL135156NHLBI NIH HHS U01 HL120393NHLBI NIH HHS X01 HL134589NIEHS NIH HHS HHSN268201600032CNIEHS NIH HHS R01 ES015794NIEHS NIH HHS R21 ES024844NIMHD NIH HHS R01 MD010443NIMHD NIH HHS R56 MD013312Spanish ministry of universities FPU19/02175tobacco-related disease research program 24RT-0025tobacco-related disease research program 27IR-0030)
6 · The paper itself

Abstract

introductionDNA methylation studies have associated methylation levels at different CpG sites or genomic regions with lung function. Moreover, genetic ancestry has been associated with lung function in Latinos. However, no epigenome-wide association study (EWAS) of lung function has been performed in this population. Here, we aimed to identify DNA methylation patterns associated with lung function in pediatric asthma among Latinos.

resultsWe conducted an EWAS in whole blood from 250 Puerto Rican and 148 Mexican American children and young adults with asthma. A total of five CpGs exceeded the genome-wide significance threshold of p = 1.17 × 10

conclusionsWe replicated previous associations of epigenetic markers with lung function in whole blood and identified novel population-specific associations shared among Latino subgroups.

Indexed as

Epigenesis, GeneticGenetic Predisposition to DiseaseGenome-Wide Association StudyAdolescentAdultAsthmaChildDNA MethylationEpigenomeFemaleHispanic or LatinoHumansMaleUnited StatesYoung AdultAsthmaEpigenome-wide association studyHispanicsLatinosLung functionMethylation

Identifiers

PMID35033200
PMCPMC8760660
OpenAlexW4205588008

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.