Evidence map›Paper›PMID 35033026›Full record

ArticleBMC genomics2022

Transcriptome analysis of Auricularia fibrillifera fruit-body responses to drought stress and rehydration.

Yiqin Wang, Zhifen Yang, Luxi Shi, Rui Yang, Hao Guo, Suqin Zhang, Guangdong Geng

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

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  9. The Deletion ofJournal of fungi (Basel, Switzerland) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yiqin Wang *College of Agriculture, Guizhou University, Guiyang, Guizhou, China.
Zhifen Yang *College of Agriculture, Guizhou University, Guiyang, Guizhou, China.
Luxi ShiCollege of Agriculture, Guizhou University, Guiyang, Guizhou, China.
Rui YangCollege of Agriculture, Guizhou University, Guiyang, Guizhou, China.
Hao GuoCollege of Agriculture, Guizhou University, Guiyang, Guizhou, China.
Suqin ZhangCollege of Agriculture, Guizhou University, Guiyang, Guizhou, China. zsqin2002@163.com.
Guangdong GengCollege of Agriculture, Guizhou University, Guiyang, Guizhou, China. genggd213@163.com.
Guizhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDrought stress severely restricts edible fungus production. The genus Auricularia has a rare drought tolerance, a rehydration capability, and is nutrient rich.

resultsThe key genes and metabolic pathways involved in drought-stress and rehydration were investigated using a transcriptome analysis to clarify the relevant molecular mechanisms. In total, 173.93 Mb clean reads, 26.09 Gb of data bulk, and 52,954 unigenes were obtained. Under drought-stress and rehydration conditions, 14,235 and 8539 differentially expressed genes, respectively, were detected. 'Tyrosine metabolic', 'caffeine metabolism', 'ribosome', 'phagosome', and 'proline and arginine metabolism', as well as 'peroxisome' and 'mitogen-activated protein kinase signaling' pathways, had major roles in A. fibrillifera responses to drought stress. 'Tyrosine' and 'caffeine metabolism' might reveal unknown mechanisms for the antioxidation of A. fibrillifera under drought-stress conditions. During the rehydration process, 'diterpenoid biosynthesis', 'butanoate metabolism', 'C

conclusionThese findings suggested that the candidate genes and metabolites involved in crucial biological pathways might regulate the drought tolerance or rehydration of Auricularia, shedding light on the corresponding mechanisms and providing new potential targets for the breeding and cultivation of drought-tolerant fungi.

Indexed as

AuriculariaDroughtsFluid TherapyFruitGene Expression ProfilingGene Expression Regulation, PlantStress, PhysiologicalTranscriptomeAuricularia fibrilliferaCaffeineDrought stressGibberellinMelaninRehydrationTranscriptome analysisγ-aminobutyric acid

Identifiers

PMID35033026
PMCPMC8760723
OpenAlexW4206587439

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.