Evidence map›Paper›PMID 35033024›Full record

ArticleBMC microbiology2022

Impact of Helicobacter pylori infection on fluid duodenal microbial community structure and microbial metabolic pathways.

Tadashi Maeda, Hiroaki Zai, Yuto Fukui, Yoshifumi Kato, Eri Kumade, Toshiyasu Watanabe, Norihiro Furusyo, Hitoshi Nakajima, Kazuho Arai, Yoshikazu Ishii and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
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  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Tadashi MaedaDepartment of General Medicine and Emergency Care, Toho University School of Medicine, 6- 11-1 Omori-nishi, Ota-ku, 143-8541, Tokyo, Japan. tadashi.ma@med.toho-u.ac.jp.
Hiroaki ZaiDepartment of General Medicine and Emergency Care, Toho University School of Medicine, 6- 11-1 Omori-nishi, Ota-ku, 143-8541, Tokyo, Japan.
Yuto FukuiDepartment of Microbiology and Infectious Diseases, Toho University School of Medicine, 5- 21-16 Omori-nishi, Ota-ku, 143-8540, Tokyo, Japan.
Yoshifumi KatoDepartment of General Medicine, Kyushu University, Fukuoka, Japan.
Eri KumadeDepartment of General Medicine and Emergency Care, Toho University School of Medicine, 6- 11-1 Omori-nishi, Ota-ku, 143-8541, Tokyo, Japan.
Toshiyasu WatanabeDepartment of General Medicine and Emergency Care, Toho University School of Medicine, 6- 11-1 Omori-nishi, Ota-ku, 143-8541, Tokyo, Japan.
Norihiro FurusyoDepartment of General Medicine, Kyushu University, Fukuoka, Japan.
Hitoshi NakajimaDepartment of General Medicine and Emergency Care, Toho University School of Medicine, 6- 11-1 Omori-nishi, Ota-ku, 143-8541, Tokyo, Japan.
Kazuho AraiDepartment of General Medicine and Emergency Care, Toho University School of Medicine, 6- 11-1 Omori-nishi, Ota-ku, 143-8541, Tokyo, Japan.
Yoshikazu IshiiDepartment of Microbiology and Infectious Diseases, Toho University School of Medicine, 5- 21-16 Omori-nishi, Ota-ku, 143-8540, Tokyo, Japan.
Kazuhiro TatedaDepartment of Microbiology and Infectious Diseases, Toho University School of Medicine, 5- 21-16 Omori-nishi, Ota-ku, 143-8540, Tokyo, Japan.
Yoshihisa UritaDepartment of General Medicine and Emergency Care, Toho University School of Medicine, 6- 11-1 Omori-nishi, Ota-ku, 143-8541, Tokyo, Japan.
Toho University · JPKyushu University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe bioactivities of commensal duodenal microbiota greatly influence the biofunction of hosts. We investigated the role of Helicobacter pylori infection in extra-gastroduodenal diseases by determining the impact of H. pylori infection on the duodenal microbiota. We sequenced 16 S rRNA genes in samples aspirated from the descending duodenum of 47 (male, 20; female, 27) individuals who were screened for gastric cancer. Samples were analysed using 16 S rRNA gene amplicon sequencing, and the LEFSe and Kyoto Encyclopaedia of Genes and Genomes methods were used to determine whether the duodenal microflora and microbial biofunctions were affected using H. pylori infection.

resultsThirteen and 34 participants tested positive and negative for H. pylori, respectively. We identified 1,404 bacterial operational taxonomic units from 23 phyla and 253 genera. H. pylori infection changed the relative mean abundance of three phyla (Proteobacteria, Actinobacteria, and TM7) and ten genera (Neisseria, Rothia, TM7-3, Leptotrichia, Lachnospiraceae, Megasphaera, F16, Moryella, Filifactor, and Paludibacter). Microbiota features were significantly influenced in H. pylori-positive participants by 12 taxa mostly classified as Gammaproteobacteria. Microbial functional annotation revealed that H. pylori significantly affected 12 microbial metabolic pathways.

conclusionsH. pylori disrupted normal bacterial communities in the duodenum and changed the biofunctions of commensal microbiota primarily by upregulating specific metabolic pathways. Such upregulation may be involved in the onset of diseases associated with H. pylori infection.

Indexed as

AgedBacteroidetesDuodenumDysbiosisFemaleGastric MucosaGastrointestinal MicrobiomeHelicobacter InfectionsHelicobacter pyloriHumansMaleMetabolic Networks and PathwaysMicrobiotaMiddle AgedProteobacteriaRNA, Ribosomal, 16SRNA, Ribosomal, 16SDuodenal microbiotaHelicobacter pyloriKEGGLEfSeMicrobial metabolic pathway

Identifiers

PMID35033024
PMCPMC8760755
OpenAlexW4205978232

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.