Evidence map›Paper›PMID 35032142›Full record

ReviewCell biology international2022

A guide for single-particle chromatin tracking in live cell nuclei.

Mengdi Zhang, Clayton Seitz, Garrick Chang, Fadil Iqbal, Hua Lin, Jing Liu

Open access · bronzeAbstract readReview
In one paragraph

Review in Cell biology international, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Mengdi ZhangDepartment of Physics, Indiana University-Purdue University Indianapolis, Indianapolis, Indiana, USA.
Clayton SeitzDepartment of Physics, Indiana University-Purdue University Indianapolis, Indianapolis, Indiana, USA.
Garrick ChangDepartment of Physics, Indiana University-Purdue University Indianapolis, Indianapolis, Indiana, USA.
Fadil IqbalDepartment of Physics, Indiana University-Purdue University Indianapolis, Indianapolis, Indiana, USA.
Hua LinDepartment of Physics, Indiana University-Purdue University Indianapolis, Indianapolis, Indiana, USA.
Jing LiuDepartment of Physics, Indiana University-Purdue University Indianapolis, Indianapolis, Indiana, USA.ORCID http://orcid.org/0000-0002-4912-4560
University of Indianapolis · USIndiana University Health · US

Funding

Tumor Microenvironment and Metastasis ProgramP30CA082709 · NCI · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI David W Clapp · 1999 to 2026
$59.3M
Chromatin mobility in response to DNA damageU01CA214282 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI BONIN, KEITH D, PARDEE, TIMOTHY SEBASTIAN · 2018 to 2022
$3.0M
NCI NIH HHS P30 CA082709NCI NIH HHS U01 CA214282NIH HHS P30CA082709NIH HHS U01CA214282
6 · The paper itself

Abstract

The emergence of labeling strategies and live cell imaging methods enables the imaging of chromatin in living cells at single digit nanometer resolution as well as milliseconds temporal resolution. These technical breakthroughs revolutionize our understanding of chromatin structure, dynamics and functions. Single molecule tracking algorithms are usually preferred to quantify the movement of these intranucleus elements to interpret the spatiotemporal evolution of the chromatin. In this review, we will first summarize the fluorescent labeling strategy of chromatin in live cells which will be followed by a systematic comparison of live cell imaging instrumentation. With the proper microscope, we will discuss the image analysis pipelines to extract the biophysical properties of the chromatin. Finally, we expect to give practical suggestions to broad biologists on how to select methods and link to the model properly according to different investigation purposes.

Indexed as

ChromatinSingle Molecule ImagingAlgorithmsChromatinchromatin motionDNA damageparticle trackingsingle molecule imaging

Identifiers

PMID35032142
PMCPMC9035067
OpenAlexW4206713546

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.