Evidence map›Paper›PMID 35030251›Full record

ArticleBlood2022

Congenital anemia reveals distinct targeting mechanisms for master transcription factor GATA1.

Leif S Ludwig, Caleb A Lareau, Erik L Bao, Nan Liu, Taiju Utsugisawa, Alex M Tseng, Samuel A Myers, Jeffrey M Verboon, Jacob C Ulirsch, Wendy Luo and 22 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Blood, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. A novelHaematologica · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. GATA1 in Normal and Pathologic Megakaryopoiesis and Platelet Development.Advances in experimental medicine and biology · 2024
    Review
  12. Article
  13. Article
  14. Article
  15. The role of GATA2 in adult hematopoiesis and cell fate determination.Frontiers in cell and developmental biology · 2023
    Review
  16. Article
  17. NovelCells · 2022
    Article
  18. Erythroid Cell Research: 3D Chromatin, Transcription Factors and Beyond.International journal of molecular sciences · 2022
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

32 authors at 8 institutions in 4 countries.

Leif S LudwigDivision of Hematology/Oncology, Boston Children's Hospital, Harvard Medical School, Boston, MA.ORCID 0000-0002-2916-2164
Caleb A LareauDivision of Hematology/Oncology, Boston Children's Hospital, Harvard Medical School, Boston, MA.ORCID 0000-0003-4179-4807
Erik L BaoDivision of Hematology/Oncology, Boston Children's Hospital, Harvard Medical School, Boston, MA.
Nan LiuDivision of Hematology/Oncology, Boston Children's Hospital, Harvard Medical School, Boston, MA.ORCID 0000-0002-8314-0900
Taiju UtsugisawaDepartment of Transfusion Medicine and Cell Processing, Faculty of Medicine, Tokyo Women's Medical University, Tokyo, Japan.
Alex M TsengDepartment of Computer Science and.
Samuel A MyersBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA.ORCID 0000-0001-7636-0887
Jeffrey M VerboonDivision of Hematology/Oncology, Boston Children's Hospital, Harvard Medical School, Boston, MA.ORCID 0000-0002-4454-6043
Jacob C UlirschDivision of Hematology/Oncology, Boston Children's Hospital, Harvard Medical School, Boston, MA.
Wendy LuoDivision of Hematology/Oncology, Boston Children's Hospital, Harvard Medical School, Boston, MA.
Christoph MuusBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA.
Claudia FioriniDivision of Hematology/Oncology, Boston Children's Hospital, Harvard Medical School, Boston, MA.
Meagan E OliveBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA.ORCID 0000-0001-8287-9474
Christopher M VockleyBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA.
Mathias MunschauerBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA.
Abigail HunterCook Children's Medical Center, Fort Worth, TX.
Hiromi OguraDepartment of Transfusion Medicine and Cell Processing, Faculty of Medicine, Tokyo Women's Medical University, Tokyo, Japan.
Toshiyuki YamamotoInstitute of Medical Genetics, Tokyo Women's Medical University, Tokyo, Japan.ORCID 0000-0002-9484-3505
Hiroko InadaSaga-Ken Medical Centre Koseikan, Saga, Japan.
Shinichiro NakagawaDepartment of Pediatrics and Child Health, Kurume University School of Medicine, Kurume, Japan.
Shuichi OhzonoDepartment of Pediatrics and Child Health, Kurume University School of Medicine, Kurume, Japan.ORCID 0000-0003-0009-9365
Vidya SubramanianBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA.
Roberto ChiarleDepartment of Pathology, Boston Children's Hospital, Harvard Medical School, Boston, MA.ORCID 0000-0003-1564-8531
Bertil GladerLucile Packard Children's Hospital, Stanford University, Palo Alto, CA.
Steven A CarrBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA.
Martin J AryeeBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA.ORCID 0000-0002-6848-1344
Anshul KundajeDepartment of Computer Science and.ORCID 0000-0003-3084-2287
Stuart H OrkinDivision of Hematology/Oncology, Boston Children's Hospital, Harvard Medical School, Boston, MA.
Aviv RegevBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA.
Timothy L McCavitCook Children's Medical Center, Fort Worth, TX.
Hitoshi KannoDepartment of Transfusion Medicine and Cell Processing, Faculty of Medicine, Tokyo Women's Medical University, Tokyo, Japan.
Vijay G SankaranBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA.ORCID 0000-0003-0044-443X
Broad Institute · USTokyo Women's Medical University · JPBoston Children's Hospital · USCook Children's Medical Center · USKurume University · JPStanford University · USLucile Packard Children's Hospital · USSaga-Ken Medical Centre Koseikan · JP

Funding

Joint Center for Mendelian GenomicsUM1HG008900 · NHGRI · BROAD INSTITUTE, INC. · PI O'DONNELL-LURIA, ANNE, REHM, HEIDI L · 2016 to 2020
$16.5M
Stem Cell and Transplantation BiologyU54DK106829 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI DEREK L STIREWALT · 2015 to 2026
$9.1M
MICROSCALED PROTEOGENOMICS FOR CANCER CLINICAL TRIALSU01CA214125 · NCI · BAYLOR COLLEGE OF MEDICINE · PI ANURAG, MEENAKSHI, CARR, STEVEN A · 2017 to 2021
$7.0M
Center of Excellence for High Throughput Proteogenomic CharacterizationU24CA210986 · NCI · BROAD INSTITUTE, INC. · PI CARR, STEVEN A, GILLETTE, MICHAEL A · 2016 to 2020
$6.4M
Systematic Genetic Dissection of Human ErythropoiesisR01DK103794 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI Vijay Ganesh Sankaran · 2014 to 2026
$5.9M
Next generation functional genomics of hematology traitsR01HL146500 · NHLBI · UNIVERSITY OF WASHINGTON · PI ALEXANDER P REINER · 2020 to 2026
$5.7M
A powerful web-based discovery platform for rare disease geneticsR01HG009141 · NHGRI · BROAD INSTITUTE, INC. · PI QUINLAN, AARON R, REHM, HEIDI L · 2017 to 2020
$2.9M
Identifying Genome-wide Association Study-Nominated Regulators of ErythropoiesisR33HL120791 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI SANKARAN, VIJAY GANESH · 2016 to 2018
$1.7M
Roles of BCL11A in γ-globin repressionK99DK120925 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI LIU, NAN · 2020 to 2021
$182k
Inference of variable chromatin loops in glioblastoma tumors and single-cellsF31CA232670 · NCI · HARVARD MEDICAL SCHOOL · PI LAREAU, CALEB ANDREW · 2018 to 2019
$63k
NCI NIH HHS F31 CA232670NCI NIH HHS U01 CA214125NCI NIH HHS U24 CA210986NHGRI NIH HHS R01 HG009141NHGRI NIH HHS UM1 HG008900NHLBI NIH HHS R01 HL146500NHLBI NIH HHS R33 HL120791NIDDK NIH HHS K99 DK120925NIDDK NIH HHS R01 DK103794NIDDK NIH HHS U54 DK106829
6 · The paper itself

Abstract

Master regulators, such as the hematopoietic transcription factor (TF) GATA1, play an essential role in orchestrating lineage commitment and differentiation. However, the precise mechanisms by which such TFs regulate transcription through interactions with specific cis-regulatory elements remain incompletely understood. Here, we describe a form of congenital hemolytic anemia caused by missense mutations in an intrinsically disordered region of GATA1, with a poorly understood role in transcriptional regulation. Through integrative functional approaches, we demonstrate that these mutations perturb GATA1 transcriptional activity by partially impairing nuclear localization and selectively altering precise chromatin occupancy by GATA1. These alterations in chromatin occupancy and concordant chromatin accessibility changes alter faithful gene expression, with failure to both effectively silence and activate select genes necessary for effective terminal red cell production. We demonstrate how disease-causing mutations can reveal regulatory mechanisms that enable the faithful genomic targeting of master TFs during cellular differentiation.

Indexed as

AnemiaGATA1 Transcription FactorCell DifferentiationChromatinChromatin ImmunoprecipitationErythropoiesisHumansChromatinGATA1 protein, humanGATA1 Transcription Factor

Identifiers

PMID35030251
PMCPMC9029090
OpenAlexW4205139675

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.