Evidence map›Paper›PMID 35030221›Full record

ArticlePloS one2022

A biogeographic 16S rRNA survey of bacterial communities of ureolytic biomineralization from California public restrooms.

Kahui Lim, Matthew Rolston, Samantha Barnum, Cara Wademan, Harold Leverenz

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 62% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Kahui LimDepartment of Civil and Environmental Engineering, University of California at Davis, Davis, California, United States of America.ORCID 0000-0002-3790-4770
Matthew RolstonHost Microbe Systems Biology Core Facility, Department of Medical Microbiology & Immunology, University of California at Davis, Davis, California, United States of America.
Samantha BarnumReal-time PCR Research & Diagnostics Core Facility, Department of Medicine & Epidemiology, University of California at Davis, Davis, California, United States of America.
Cara WademanReal-time PCR Research & Diagnostics Core Facility, Department of Medicine & Epidemiology, University of California at Davis, Davis, California, United States of America.
Harold LeverenzDepartment of Civil and Environmental Engineering, University of California at Davis, Davis, California, United States of America.
University of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we examined the total bacterial community associated with ureolytic biomineralization from urine drainage systems. Biomineral samples were obtained from 11 California Department of Transportation public restrooms fitted with waterless, low-flow, or conventional urinals in 2019. Following high throughput 16S rRNA Illumina sequences processed using the DADA2 pipeline, the microbial diversity assessment of 169 biomineral and urine samples resulted in 3,869 reference sequences aggregated as 598 operational taxonomic units (OTUs). Using PERMANOVA testing, we found strong, significant differences between biomineral samples grouped by intrasystem sampling location and urinal type. Biomineral microbial community profiles and alpha diversities differed significantly when controlling for sampling season. Observational statistics revealed that biomineral samples obtained from waterless urinals contained the largest ureC/16S gene copy ratios and were the least diverse urinal type in terms of Shannon indices. Waterless urinal biomineral samples were largely dominated by the Bacilli class (86.1%) compared to low-flow (41.3%) and conventional samples (20.5%), and had the fewest genera that account for less than 2.5% relative abundance per OTU. Our findings are useful for future microbial ecology studies of urine source-separation technologies, as we have established a comparative basis using a large sample size and study area.

Indexed as

BacteriaBathroom EquipmentBiomineralizationCaliforniaDNA, BacterialDrainage, SanitaryHigh-Throughput Nucleotide SequencingHumansMicrobiotaPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNAToilet FacilitiesDNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID35030221
PMCPMC8759634
OpenAlexW4206573620

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.