Evidence map›Paper›PMID 35028974›Full record

ArticleThe EMBO journal2022

Metabolic remodeling maintains a reducing environment for rapid activation of the yeast DNA replication checkpoint.

Lili Li, Jie Wang, Zijia Yang, Yiling Zhao, Hui Jiang, Luguang Jiang, Wenya Hou, Risheng Ye, Qun He, Martin Kupiec and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. A DNA damage-induced phosphorylation circuit enhances Mec1Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 4 countries.

Lili LiState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, China.
Jie WangState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China.
Zijia YangState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China.
Yiling ZhaoCenter for Quantitative Biology and Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China.ORCID 0000-0001-7396-8539
Hui JiangState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, China.
Luguang JiangMOE Key Laboratory of Crop Heterosis and Utilization, National Maize Improvement Center of China, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China.ORCID 0000-0002-4365-224X
Wenya HouShenzhen University General Hospital, Guangdong Key Laboratory for Genome Stability and Disease Prevention, Shenzhen University School of Medicine, Shenzhen, China.
Risheng YeDepartment of Medical Education, Texas Tech University Health Sciences Center Paul L. Foster School of Medicine, El Paso, TX, USA.
Qun HeState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, China.
Martin KupiecThe Shmunis School of Biomedicine and Cancer Research, Tel Aviv University, Ramat Aviv, Israel.ORCID 0000-0002-7934-3342
Brian LukeInstitute of Molecular Biology (IMB), Mainz, Germany.ORCID 0000-0002-1648-5511
Qinhong CaoState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, China.ORCID 0000-0002-2055-3513
Zhi QiCenter for Quantitative Biology and Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China.ORCID 0000-0002-1572-9721
Zhen LiState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China.
Huiqiang LouSouth China Hospital, Health Science Center, Guangdong Key Laboratory of Genome Instability and Disease Prevention, Shenzhen University School of Medicine, Shenzhen, China.ORCID 0000-0003-4465-6186
China Agricultural University · CNPeking University · CNJohannes Gutenberg University Mainz · DEShenzhen University · CNShenzhen University Health Science Center · CNTel Aviv University · ILTexas Tech University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nucleotide metabolism fuels normal DNA replication and is also primarily targeted by the DNA replication checkpoint when replication stalls. To reveal a comprehensive interconnection between genome maintenance and metabolism, we analyzed the metabolomic changes upon replication stress in the budding yeast S. cerevisiae. We found that upon treatment of cells with hydroxyurea, glucose is rapidly diverted to the oxidative pentose phosphate pathway (PPP). This effect is mediated by the AMP-dependent kinase, SNF1, which phosphorylates the transcription factor Mig1, thereby relieving repression of the gene encoding the rate-limiting enzyme of the PPP. Surprisingly, NADPH produced by the PPP is required for efficient recruitment of replication protein A (RPA) to single-stranded DNA, providing the signal for the activation of the Mec1/ATR-Rad53/CHK1 checkpoint signaling kinase cascade. Thus, SNF1, best known as a central energy controller, determines a fast mode of replication checkpoint activation through a redox mechanism. These findings establish that SNF1 provides a hub with direct links to cellular metabolism, redox, and surveillance of DNA replication in eukaryotes.

Indexed as

DNA ReplicationCell Cycle ProteinsCheckpoint Kinase 2DNA, Single-StrandedGlucoseGlycolysisHydroxyureaIntracellular Signaling Peptides and ProteinsNADPPentose Phosphate PathwayPhosphorylationProtein Serine-Threonine KinasesReplication Protein ARepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCell Cycle ProteinsCheckpoint Kinase 2CYC8 protein, S cerevisiaeDNA, Single-StrandedGlucoseHydroxyureaIntracellular Signaling Peptides and ProteinsMEC1 protein, S cerevisiaeMIG1 protein, S cerevisiaeNADPProtein Serine-Threonine KinasesRAD53 protein, S cerevisiaeReplication Protein ARepressor ProteinsSaccharomyces cerevisiae ProteinsSNF1-related protein kinasescarbon metabolismcell cycle checkpointsDNA replication stressgenome stabilityreductive/oxidative (redox)

Identifiers

PMID35028974
PMCPMC8844976
OpenAlexW4205674969

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.