Evidence map›Paper›PMID 35028563›Full record

ArticleRSC medicinal chemistry2021

Potency and metabolic stability: a molecular hybrid case in the design of novel PF74-like small molecules targeting HIV-1 capsid protein.

Rajkumar Lalji Sahani, Thamina Akther, Maria E Cilento, Andres Emanuelli Castaner, Huanchun Zhang, Karen A Kirby, Jiashu Xie, Stefan G Sarafianos, Zhengqiang Wang

Open access · greenAbstract read
In one paragraph

Article in RSC medicinal chemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Rajkumar Lalji SahaniCenter for Drug Design, College of Pharmacy, University of Minnesota Minneapolis MN 55455 USA wangx472@umn.edu.ORCID https://orcid.org/0000-0002-0868-4684
Thamina AktherCenter for Drug Design, College of Pharmacy, University of Minnesota Minneapolis MN 55455 USA wangx472@umn.edu.
Maria E CilentoLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine Atlanta GA 30322 USA.
Andres Emanuelli CastanerLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine Atlanta GA 30322 USA.
Huanchun ZhangLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine Atlanta GA 30322 USA.
Karen A KirbyLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine Atlanta GA 30322 USA.
Jiashu XieCenter for Drug Design, College of Pharmacy, University of Minnesota Minneapolis MN 55455 USA wangx472@umn.edu.
Stefan G SarafianosLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine Atlanta GA 30322 USA.
Zhengqiang WangCenter for Drug Design, College of Pharmacy, University of Minnesota Minneapolis MN 55455 USA wangx472@umn.edu.ORCID https://orcid.org/0000-0002-1326-5986
Emory University · USUniversity of Minnesota · US

Funding

Structural studies of HIV Capsid with host factors and Capsid-targeting antiviralsR01AI120860 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI Stefan G Sarafianos, Zhengqiang Wang · 2015 to 2026
$6.0M
Molecular Interactions of HIV-1 with the Nuclear Pore ComplexR01AI148382 · NIAID · EMORY UNIVERSITY · PI MELIKIAN, GREGORY B, SARAFIANOS, STEFAN G · 2019 to 2022
$5.5M
Using EFdA to target HIV from various subtypes:Inhibition mechanism and efficacy against clinical resistant mutantsF31AI155158 · NIAID · EMORY UNIVERSITY · PI CILENTO, MARIA · 2021 to 2021
$46k
NIAID NIH HHS F31 AI155158NIAID NIH HHS R01 AI120860NIAID NIH HHS R01 AI148382
6 · The paper itself

Abstract

PF74 (1) is a potent and well-characterized prototypical small molecule targeting human immunodeficiency virus type 1 (HIV-1) capsid protein (CA), but not a viable antiviral lead due to the lack of metabolic stability. We report herein our molecular hybridization-based medicinal chemistry efforts toward potent and metabolically stable PF74-like small molecules. The design of the new sub-chemotype 4 rationally combines binding features of two recently reported PF74-like compounds 2 and 3. The subsequent confirmation and structure-activity relationship (SAR) of hit 4a entailed the chemical synthesis of 37 novel analogs, most of which showed modest but meaningful thermal shift, and low μM antiviral activity. The most potent analogs (4a, 4d, 4o, and 4r) all exhibited noticeably improved metabolic stability over PF74. Molecular modeling suggests that these new analogs bind to the PF74 binding site. Overall, our work demonstrated that the molecular hybridization approach is suitable for designing compounds with balanced potency and metabolic stability.

Identifiers

PMID35028563
PMCPMC8672819
OpenAlexW3202164674

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.