Evidence map›Paper›PMID 35027870›Full record

ArticleJournal of biomolecular techniques : JBT2021

Direct detection of SARS-CoV-2 RNA using high-contrast pH-sensitive dyes.

Timothy A Brown, Katherine S Schaefer, Arthur Tsang, Hyun Ah Yi, Jonathan B Grimm, Andrew L Lemire, Fadi M Jradi, Charles Kim, Kevin McGowan, Kimberly Ritola and 5 more

Open access · diamondAbstract read
In one paragraph

Article in Journal of biomolecular techniques : JBT, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Loop-Mediated Isothermal Amplification: From Theory to Practice.Russian journal of bioorganic chemistry · 2022
    Article
  9. Review
  10. Initial Evaluation of a Mobile SARS-CoV-2 RT-LAMP Testing Strategy.Journal of biomolecular techniques : JBT · 2021
    Article
  11. Initial evaluation of a mobile SARS-CoV-2 RT-LAMP testing strategy.medRxiv : the preprint server for health sciences · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Timothy A BrownJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147.
Katherine S SchaeferJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147.
Arthur TsangJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147.
Hyun Ah YiJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147.
Jonathan B GrimmJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147.
Andrew L LemireJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147.
Fadi M JradiJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147.
Charles KimJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147.
Kevin McGowanJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147.
Kimberly RitolaJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147.
Derek T ArmstrongDivision of Medical Microbiology, Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287-7093.
Heba H MostafaDivision of Medical Microbiology, Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287-7093.
Wyatt KorffJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147.
Ronald D ValeJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147.
Luke D LavisJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147.
Janelia Research Campus · USHoward Hughes Medical Institute · USJohns Hopkins Medicine · USJohns Hopkins University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The worldwide coronavirus disease 2019 pandemic has had devastating effects on health, healthcare infrastructure, social structure, and economics. One of the limiting factors in containing the spread of this virus has been the lack of widespread availability of fast, inexpensive, and reliable methods for testing of individuals. Frequent screening for infected and often asymptomatic people is a cornerstone of pandemic management plans. Here, we introduce 2 pH-sensitive "LAMPshade" dyes as novel readouts in an isothermal Reverse Transcriptase Loop-mediated isothermal AMPlification amplification assay for severe acute respiratory syndrome coronavirus 2 RNA. The resulting JaneliaLAMP assay is robust, simple, inexpensive, and has low technical requirements, and we describe its use and performance in direct testing of contrived and clinical samples without RNA extraction.

Indexed as

COVID-19RNA, ViralColoring AgentsHumansHydrogen-Ion ConcentrationMolecular Diagnostic TechniquesNucleic Acid Amplification TechniquesSARS-CoV-2Sensitivity and SpecificitySocial StructureColoring AgentsRNA, ViralcarbofluoresceinLAMPshadeRT-LAMPSi-fluorescein

Identifiers

PMID35027870
PMCPMC8730524
OpenAlexW4241580911

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.