Evidence map›Paper›PMID 35025930›Full record

ArticlePloS one2022

Diagnostic performance of oral swabs for non-sputum based TB diagnosis in a TB/HIV endemic setting.

Sylvia M LaCourse, Evans Seko, Rachel Wood, Wilfred Bundi, Gregory S Ouma, Janet Agaya, Barbra A Richardson, Grace John-Stewart, Steve Wandiga, Gerard A Cangelosi

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 3 pooled it
2.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 3 syntheses or guidelines pooled it, 30 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
  5. Diagnostic Accuracy and Usability of the PluslifeDiagnostics (Basel, Switzerland) · 2026
    Article
  6. Article
  7. Diagnostic Yield of Tongue Swab- Compared to Sputum-Based Molecular Testing for Tuberculosis in Four High-Burden Countries.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2026
    Article
  8. Article
  9. Article
  10. Oral Rinse as an Alternative Diagnostic Specimen for Detection of Tuberculosis.American journal of respiratory and critical care medicine · 2025
    Article
  11. High-sensitivity detection ofJournal of clinical microbiology · 2025
    Article
  12. Article
  13. Article
  14. Review
  15. High-sensitivity detection ofmedRxiv : the preprint server for health sciences · 2024
    Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Tongue swab testing on two automated tuberculosis diagnostic platforms, Cepheid XpertmedRxiv : the preprint server for health sciences · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Sylvia M LaCourseDivision of Allergy and Infectious Diseases, Department of Medicine, University of Washington, Seattle, WA, United States of America.ORCID 0000-0002-9809-5997
Evans SekoKenya Medical Research Institute (KEMRI), Kisumu, Kenya.
Rachel WoodDepartment of Environmental & Occupational Health, University of Washington, Seattle, WA, United States of America.
Wilfred BundiKenya Medical Research Institute (KEMRI), Kisumu, Kenya.
Gregory S OumaKenya Medical Research Institute (KEMRI), Kisumu, Kenya.
Janet AgayaKenya Medical Research Institute (KEMRI), Kisumu, Kenya.
Barbra A RichardsonDepartment of Global Health, University of Washington, Seattle, WA, United States of America.
Grace John-StewartDivision of Allergy and Infectious Diseases, Department of Medicine, University of Washington, Seattle, WA, United States of America.
Steve WandigaKenya Medical Research Institute (KEMRI), Kisumu, Kenya.
Gerard A CangelosiDepartment of Global Health, University of Washington, Seattle, WA, United States of America.
Kenya Medical Research Institute · KEUniversity of Washington · US

Funding

University of Washington/Fred Hutch Center for AIDS ResearchP30AI027757 · NIAID · UNIVERSITY OF WASHINGTON · PI Judith Tsui · 1988 to 2026
$104.9M
Non-invasive diagnosis of adult pulmonary tuberculosisR01AI139254 · NIAID · UNIVERSITY OF WASHINGTON · PI CANGELOSI, GERARD A · 2019 to 2022
$1.3M
Impact of maternal HIV on Mycobacterium tuberculosis infection among peripartum women and their infantsK23AI120793 · NIAID · UNIVERSITY OF WASHINGTON · PI LACOURSE, SYLVIA · 2016 to 2020
$910k
NIAID NIH HHS K23 AI120793NIAID NIH HHS P30 AI027757NIAID NIH HHS R01 AI139254
6 · The paper itself

Abstract

objectiveWe evaluated diagnostic performance of oral swab analysis (OSA) for tuberculosis (TB) in a high HIV/TB burden setting in Kenya.

methodsIn this cross-sectional study, buccal swabs and sputum were collected from 100 participants with suspected TB in outpatient clinics in Kenya at enrollment and subsequent morning visits. Buccal swabs underwent IS6110-targeted qPCR analysis. Sputum was evaluated by Xpert MTB/RIF (Xpert) and culture. Diagnostic performance of OSA for TB diagnosis was evaluated relative to a combined reference of sputum Xpert and culture.

resultsAmong 100 participants, 54% were living with HIV (PLHIV). Twenty percent (20/100) of participants had confirmed TB (19/20 [95%] culture-positive, 17/20 [85%] Xpert-positive). Overall buccal swab sensitivity was 65.0% (95% CI 40.8-84.6%) vs. sputum Xpert/culture and 76.5% (95% CI 50.1-93.2%) vs. sputum Xpert alone. Specificity was 81.3% (95% CI 71.0-89.1%) and 81.9% (95% CI 72.0-89.5%) compared to sputum Xpert/culture and Xpert alone, respectively. Sensitivity among PLHIV (n = 54) with suspected TB was 83.3% (95% CI 35.9-99.6%) vs. sputum Xpert/culture and 100% (95% CI 47.8-100.0%) vs. sputum Xpert alone. Among participants with TB, mean OSA threshold quantitation cycle (Cq) value was lower (stronger signal) at subsequent morning compared to enrolment visit (33.4 SD ± 3.7 vs. 35.2 SD ± 2.9, p = 0.009).

conclusionsIn this pilot study, results confirm M. tuberculosis DNA is detectable in oral swabs including among PLHIV with fair diagnostic performance. Further work is needed to optimize OSA and evaluate its utility in diverse settings.

Indexed as

AdultCross-Sectional StudiesDNA, BacterialFemaleHIV InfectionsHumansKenyaMaleMouthMycobacterium tuberculosisReal-Time Polymerase Chain ReactionSensitivity and SpecificityTuberculosisDNA, Bacterial

Identifiers

PMID35025930
PMCPMC8758000
OpenAlexW4205760336

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.