Evidence map›Paper›PMID 35025926›Full record

ArticlePloS one2022

An international, interlaboratory ring trial confirms the feasibility of an extraction-less "direct" RT-qPCR method for reliable detection of SARS-CoV-2 RNA in clinical samples.

Margaret G Mills, Emily Bruce, Meei-Li Huang, Jessica W Crothers, Ollivier Hyrien, Christopher A L Oura, Lemar Blake, Arianne Brown Jordan, Susan Hester, Leah Wehmas and 33 more

Abstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

43 authors.

Margaret G MillsVirology Division, Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0002-0493-9408
Emily BruceDivision of Immunobiology, Department of Medicine, Robert Larner, M.D. College of Medicine, University of Vermont, Burlington, Vermont, United States of America.
Meei-Li HuangVirology Division, Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America.
Jessica W CrothersDivision of Immunobiology, Department of Medicine, Robert Larner, M.D. College of Medicine, University of Vermont, Burlington, Vermont, United States of America.
Ollivier HyrienVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Christopher A L OuraSchool of Veterinary Medicine, University of the West Indies, St. Augustine, Trinidad and Tobago.
Lemar BlakeSchool of Veterinary Medicine, University of the West Indies, St. Augustine, Trinidad and Tobago.
Arianne Brown JordanMinistry of Health, Port of Spain, Trinidad and Tobago.ORCID 0000-0002-4146-3920
Susan HesterOffice of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, North Carolina, United States of America.
Leah WehmasOffice of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, North Carolina, United States of America.
Bernard MariUniversité Côte d'Azur, CNRS, Institut de Pharmacologie Moléculaire et Cellulaire, FHU-OncoAge, Valbonne, France.
Pascal BarbyUniversité Côte d'Azur, CNRS, Institut de Pharmacologie Moléculaire et Cellulaire, FHU-OncoAge, Valbonne, France.
Caroline LacouxUniversité Côte d'Azur, CNRS, Institut de Pharmacologie Moléculaire et Cellulaire, FHU-OncoAge, Valbonne, France.
Julien FassyUniversité Côte d'Azur, CNRS, Institut de Pharmacologie Moléculaire et Cellulaire, FHU-OncoAge, Valbonne, France.
Pablo VialFacultad de Medicina Clínica Alemana Universidad del Desarrollo, Programa Hantavirus, Instituto de Ciencias e Innovación en Medicina, Santiago, Chile.ORCID 0000-0002-4135-0416
Cecilia VialFacultad de Medicina Clínica Alemana Universidad del Desarrollo, Programa Hantavirus, Instituto de Ciencias e Innovación en Medicina, Santiago, Chile.
Jose R W MartinezFacultad de Medicina Clínica Alemana Universidad del Desarrollo, Programa Hantavirus, Instituto de Ciencias e Innovación en Medicina, Santiago, Chile.
Olusola Olalekan OladipoBiochemistry Division, National Veterinary Research Institute, Vom, Nigeria.
Bitrus InuwaInfectious and Transboundary Animal Diseases, National Veterinary Research Institute, Vom, Nigeria.
Ismaila ShittuInfectious and Transboundary Animal Diseases, National Veterinary Research Institute, Vom, Nigeria.
Clement A MesekoInfectious and Transboundary Animal Diseases, National Veterinary Research Institute, Vom, Nigeria.ORCID 0000-0001-7003-7528
Roger ChammasFaculdade de Medicina da Universidade de São Paulo, Departamento de Radiologia e Oncologia, Centro de Investigação Translacional em Oncologia, Instituto do Cancer do Estado de São Paulo, São Paulo, Brazil.ORCID 0000-0003-0342-8726
Carlos Ferreira SantosDepartment of Biological Sciences, Bauru School of Dentistry, University of São Paulo, Bauru, São Paulo, Brazil.
Thiago José DionísioDepartment of Biological Sciences, Bauru School of Dentistry, University of São Paulo, Bauru, São Paulo, Brazil.
Thais Francini GarbieriDepartment of Biological Sciences, Bauru School of Dentistry, University of São Paulo, Bauru, São Paulo, Brazil.
Viviane Aparecida ParisiDepartment of Biological Sciences, Bauru School of Dentistry, University of São Paulo, Bauru, São Paulo, Brazil.
Maria Cassia Mendes-CorreaDepartment of Infectious Diseases, Institute of Tropical Medicine of São Paulo, São Paulo, Brazil.
Anderson V de PaulaDepartment of Infectious Diseases, Institute of Tropical Medicine of São Paulo, São Paulo, Brazil.
Camila M RomanoDepartment of Infectious Diseases, Institute of Tropical Medicine of São Paulo, São Paulo, Brazil.
Luiz Gustavo Bentim GóesScientific Platform Pasteur-USP, Universidade de São Paulo, São Paulo, Brazil.
Paola MinoprioScientific Platform Pasteur-USP, Universidade de São Paulo, São Paulo, Brazil.
Angelica C CamposScientific Platform Pasteur-USP, Universidade de São Paulo, São Paulo, Brazil.
Marielton P CunhaScientific Platform Pasteur-USP, Universidade de São Paulo, São Paulo, Brazil.ORCID 0000-0002-2102-631X
Ana Paula P VilelaScientific Platform Pasteur-USP, Universidade de São Paulo, São Paulo, Brazil.
Tonney NyirendaDepartment of Pathology, College of Medicine, University of Malawi, Blantyre, Malawi.
Rajhab Sawasawa MkakosyaDepartment of Pathology, College of Medicine, University of Malawi, Blantyre, Malawi.
Adamson S MuulaDepartment of Public Health, College of Medicine, University of Malawi, Blantyre, Malawi.
Rebekah E DummChildren's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Rebecca M HarrisChildren's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Constance A MitchellHealth and Environmental Sciences Institute, Washington, DC, United States of America.
Syril PettitHealth and Environmental Sciences Institute, Washington, DC, United States of America.ORCID 0000-0002-4320-5343
Jason BottenDivision of Immunobiology, Department of Medicine, Robert Larner, M.D. College of Medicine, University of Vermont, Burlington, Vermont, United States of America.
Keith R JeromeVirology Division, Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America.

Funding

SDMC: HIV Vaccine Trials NetworkUM1AI068635 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Peter B. Gilbert, Yunda Huang · 2011 to 2026
$385.9M
Using Dengue Controlled Human Infection Model to Identify Adaptive Immune Correlates of ProtectionP20GM125498 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI Ellen Kozelka · 2018 to 2026
$24.9M
Modeling Mechanisms of Adjuvanted Influenza Vaccine Induced IgG Repertoire Diversity and Heterosubtypic ImmunityR01AI129518 · NIAID · UNIVERSITY OF ROCHESTER · PI HYRIEN, OLLIVIER, ZAND, MARTIN S · 2017 to 2021
$3.5M
NIAID NIH HHS R01 AI129518NIAID NIH HHS UM1 AI068635NIGMS NIH HHS P20 GM125498
6 · The paper itself

Abstract

Reverse transcription-quantitative polymerase chain reaction (RT-qPCR) is used worldwide to test and trace the spread of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). "Extraction-less" or "direct" real time-reverse transcription polymerase chain reaction (RT-PCR) is a transparent and accessible qualitative method for SARS-CoV-2 detection from nasopharyngeal or oral pharyngeal samples with the potential to generate actionable data more quickly, at a lower cost, and with fewer experimental resources than full RT-qPCR. This study engaged 10 global testing sites, including laboratories currently experiencing testing limitations due to reagent or equipment shortages, in an international interlaboratory ring trial. Participating laboratories were provided a common protocol, common reagents, aliquots of identical pooled clinical samples, and purified nucleic acids and used their existing in-house equipment. We observed 100% concordance across laboratories in the correct identification of all positive and negative samples, with highly similar cycle threshold values. The test also performed well when applied to locally collected patient nasopharyngeal samples, provided the viral transport media did not contain charcoal or guanidine, both of which appeared to potently inhibit the RT-PCR reaction. Our results suggest that direct RT-PCR assay methods can be clearly translated across sites utilizing readily available equipment and expertise and are thus a feasible option for more efficient COVID-19 coronavirus disease testing as demanded by the continuing pandemic.

Indexed as

COVID-19COVID-19 TestingFeasibility StudiesHumansNasopharynxPandemicsReal-Time Polymerase Chain ReactionReverse TranscriptionRNA, ViralSARS-CoV-2Sensitivity and SpecificitySerologic TestsSpecimen HandlingRNA, Viral

Identifiers

PMID35025926
PMCPMC8758094

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.