Evidence map›Paper›PMID 35025103›Full record

ArticleEuropean journal of immunology2022

Guidelines for standardizing T-cell cytometry assays to link biomarkers, mechanisms, and disease outcomes in type 1 diabetes.

Jennie H M Yang, Kirsten A Ward-Hartstonge, Daniel J Perry, J Lori Blanchfield, Amanda L Posgai, Alice E Wiedeman, Kirsten Diggins, Adeeb Rahman, Timothy I M Tree, Todd M Brusko and 7 more

Open access · greenAbstract read
In one paragraph

Article in European journal of immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 3 countries.

Jennie H M YangDepartment of Immunobiology, Faculty of Life Sciences & Medicine, King's College, London, UK.
Kirsten A Ward-HartstongeDepartment of Surgery, University of British Columbia, Vancouver, California, USA.
Daniel J PerryDepartment of Pathology, Immunology, and Laboratory Medicine, University of Florida Diabetes Institute, Gainesville, Florida, USA.
J Lori BlanchfieldCenter for Translational Research, Benaroya Research Institute, Seattle, Washington, USA.
Amanda L PosgaiDepartment of Pathology, Immunology, and Laboratory Medicine, University of Florida Diabetes Institute, Gainesville, Florida, USA.
Alice E WiedemanCenter for Translational Research, Benaroya Research Institute, Seattle, Washington, USA.
Kirsten DigginsCenter for Translational Research, Benaroya Research Institute, Seattle, Washington, USA.
Adeeb RahmanHuman Immune Monitoring Center, Hess Center for Science and Medicine, Icahn School of Medicine, New York, New York, USA.
Timothy I M TreeDepartment of Immunobiology, Faculty of Life Sciences & Medicine, King's College, London, UK.
Todd M BruskoDepartment of Pathology, Immunology, and Laboratory Medicine, University of Florida Diabetes Institute, Gainesville, Florida, USA.
Megan K LevingsDepartment of Surgery, University of British Columbia, Vancouver, California, USA.ORCID 0000-0002-0305-5790
Eddie A JamesCenter for Translational Research, Benaroya Research Institute, Seattle, Washington, USA.ORCID 0000-0002-7217-5729
Sally C KentDiabetes Center of Excellence, University of Medicine, University of Massachusetts Chan Medical School, Worcester, Massachusetts, USA.
Cate SpeakeCenter for Interventional Immunology, Benaroya Research Institute, Seattle, Washington, USA.
Dirk HomannPrecision Immunology Institute, Icahn School of Medicine, New York, New York, USA.ORCID 0000-0002-7622-5754
S Alice LongCenter for Translational Research, Benaroya Research Institute, Seattle, Washington, USA.
Immunology of Diabetes Society T-Cell Cytometry Group
Institute of Translational Health Sciences · USUniversity of Florida · USNational Health Service · GBUniversity of British Columbia · CAHess (United States) · USPrecision Research (United States) · USSociety of Interventional Radiology · USUniversity of Massachusetts Chan Medical School · US

Funding

Project 3P01AI042288 · NIAID · UNIVERSITY OF FLORIDA · PI Todd Michael Brusko · 1997 to 2026
$32.9M
Translational Research CoreP30DK020541 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI STREAMSON C CHUA · 2015 to 2026
$27.7M
Human Pancreas Analysis Program-T2DU01DK123716 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI ATKINSON, MARK A., BOTTINO, RITA · 2019 to 2024
$6.6M
The CD226 costimulatory axis in type 1 diabetesR01DK106191 · NIDDK · UNIVERSITY OF FLORIDA · PI Todd Michael Brusko · 2016 to 2026
$4.4M
Genetic Regulation of Human Beta Cell DestructionUC4DK104194 · NIDDK · UNIVERSITY OF FLORIDA · PI MATHEWS, CLAYTON E · 2014 to 2014
$3.1M
Defining mechanisms of CD8 T cell exhaustion in T1DR01AI141952 · NIAID · BENAROYA RESEARCH INST AT VIRGINIA MASON · PI LONG, S ALICE · 2020 to 2024
$2.8M
Human Islet-Infiltrating T Cell Biology: Reactivity, Structure, and FunctionUC4DK116284 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI HARLAN, DAVID MARSHALL, KENT, SALLY CHOATE · 2017 to 2017
$2.0M
CIHRDepartment of HealthNIAID NIH HHS P01 AI042288NIAID NIH HHS R01 AI141952NIDDK NIH HHS P30 DK020541NIDDK NIH HHS R01 DK106191NIDDK NIH HHS U01 DK123716NIDDK NIH HHS UC4 DK104194NIDDK NIH HHS UC4 DK116284
6 · The paper itself

Abstract

Cytometric immunophenotyping is a powerful tool to discover and implement T-cell biomarkers of type 1 diabetes (T1D) progression and response to clinical therapy. Although many discovery-based T-cell biomarkers have been described, to date, no such markers have been widely adopted in standard practice. The heterogeneous nature of T1D and lack of standardized assays and experimental design across studies is a major barrier to the broader adoption of T-cell immunophenotyping assays. There is an unmet need to harmonize the design of immunophenotyping assays, including those that measure antigen-agnostic cell populations, such that data collected from different clinical trial sites and T1D cohorts are comparable, yet account for cohort-specific features and different drug mechanisms of action. In these Guidelines, we aim to provide expert advice on how to unify aspects of study design and practice. We provide recommendations for defining cohorts, method implementation, as well as tools for data analysis and reporting by highlighting and building on selected successes. Harmonization of cytometry-based T-cell assays will allow researchers to better integrate findings across trials, ultimately enabling the identification and validation of biomarkers of disease progression and treatment response in T1D.

Indexed as

Diabetes Mellitus, Type 1BiomarkersFlow CytometryHumansImmunophenotypingT-LymphocytesBiomarkersbiomarkersflow cytometryimmune monitoringT cellstype 1 diabetes

Identifiers

PMID35025103
PMCPMC9006584
OpenAlexW4205423449

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.