Evidence map›Paper›PMID 35024966›Full record

ArticleArchives of virology2022

Pathogenicity and genome-wide sequence analysis reveals relationships between soybean mosaic virus strains.

Le Gao, Yueying Wu, Jie An, Wenxuan Huang, Xinlei Liu, Yongguo Xue, Xiaoyan Luan, Feng Lin, Lianjun Sun

Abstract read
In one paragraph

Article in Archives of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  6. International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Le Gao *Department of Horticulture, Beijing Vocational College of Agriculture, Beijing, 102442, China. gaole@bvca.edu.cn.ORCID http://orcid.org/0000-0003-4852-8894
Yueying Wu *State Key Laboratory of Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, 100193, China.
Jie AnState Key Laboratory of Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, 100193, China.
Wenxuan HuangState Key Laboratory of Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, 100193, China.
Xinlei LiuInstitute of Soybean Research, Heilongjiang Provincial Academy of Agricultural Sciences, Harbin, 150086, China.
Yongguo XueInstitute of Soybean Research, Heilongjiang Provincial Academy of Agricultural Sciences, Harbin, 150086, China.
Xiaoyan LuanInstitute of Soybean Research, Heilongjiang Provincial Academy of Agricultural Sciences, Harbin, 150086, China.
Feng LinDepartment of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, 48824, USA.
Lianjun SunState Key Laboratory of Agrobiotechnology, Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, 100193, China. sunlj@cau.edu.cn.

Funding

Fundamental Research Funds for the Central Universities 2020TC178National Natural Science Foundation of China 32001571
6 · The paper itself

Abstract

Soybean mosaic virus (SMV) is the most prevalent viral pathogen in soybean. In China, the SMV strains SC and N are used simultaneously in SMV resistance assessments of soybean cultivars, but the pathogenic relationship between them is unclear. In this study, SMV strains N1 and N3 were found to be the most closely related to SC18. Moreover, N3 was found to be more virulent than N1. A global pathotype classification revealed the highest level of genetic diversity in China. The N3 type was the most frequent and widespread worldwide, implying that SMV possibly originated in China and spread across continents through the dissemination of infected soybean. It also suggests that the enhanced virulence of N3 facilitated its spread and adaptability in diverse geographical and ecological regions worldwide. Phylogenetic analysis revealed prominent geographical associations among SMV strains/isolates, and genomic nucleotide diversity analysis and neutrality tests demonstrated that the whole SMV genome is under negative selection, with the P1 gene being under the greatest selection pressure. The results of this study will facilitate the nationwide use of SMV-resistant soybean germplasm and could provide useful insights into the molecular variability, geographical distribution, phylogenetic relationships, and evolutionary history of SMV around the world.

Indexed as

Plant DiseasesPotyvirusGlycine maxPhylogenySequence AnalysisVirulence

Identifiers

PMID35024966
PMCPMC8755985

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.