Evidence map›Paper›PMID 35024767›Full record

ArticleThe Journal of experimental medicine2022

The transcription factor HIF-1α mediates plasticity of NKp46+ innate lymphoid cells in the gut.

Ewelina Krzywinska, Michal Sobecki, Shunmugam Nagarajan, Julian Zacharjasz, Murtaza M Tambuwala, Abigaelle Pelletier, Eoin Cummins, Dagmar Gotthardt, Joachim Fandrey, Yann M Kerdiles and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 46 citations in OpenAlex.

  1. DNA From Neutrophil Extracellular Traps Restricts Group 3 Innate Lymphoid Cells Function in Intestinal Epithelial Repair via CCDC25.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
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  9. Innate Lymphoid Cells.Advances in experimental medicine and biology · 2025
    Review
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  12. Group 3 innate lymphoid cells in intestinal health and disease.Nature reviews. Gastroenterology & hepatology · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 6 countries.

Ewelina Krzywinska *Institute of Anatomy, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-4311-2972
Michal Sobecki *Institute of Anatomy, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-8177-0327
Shunmugam NagarajanInstitute of Anatomy, University of Zurich, Zurich, Switzerland.ORCID 0000-0001-6676-954X
Julian ZacharjaszInstitute of Anatomy, University of Zurich, Zurich, Switzerland.ORCID 0000-0003-2091-7070
Murtaza M TambuwalaSchool of Pharmacy & Pharmaceutical Sciences, Ulster University, Coleraine, UK.ORCID 0000-0001-8499-9891
Abigaelle PelletierInstitute of Anatomy, University of Zurich, Zurich, Switzerland.ORCID 0000-0003-2343-5552
Eoin CumminsSchool of Medicine, University College Dublin, Conway Institute, Dublin, Ireland.ORCID 0000-0002-9346-8299
Dagmar GotthardtInstitute of Pharmacology and Toxicology, University of Veterinary Medicine, Vienna, Austria.ORCID 0000-0002-8416-1236
Joachim FandreyInstitut für Physiologie, Universitätsklinikum Essen, Universität Duisburg-Essen, Essen, Germany.ORCID 0000-0001-9585-0531
Yann M KerdilesCentre d'Immunologie de Marseille-Luminy, Aix Marseille Université UM2, Institut National de la Santé et de la Recherche Médicale, U1104, Centre National de la Recherche Scientifique UMR7280, Marseille, France.ORCID 0000-0002-8605-1073
Carole PeyssonnauxUniversité de Paris, Institut Cochin, Institut National de la Santé et de la Recherche Médicale, Centre National de la Recherche Scientifique, Paris, France.ORCID 0000-0002-1392-8225
Cormac T TaylorSchool of Medicine, University College Dublin, Conway Institute, Dublin, Ireland.ORCID 0000-0002-0946-1247
Veronika SexlInstitute of Pharmacology and Toxicology, University of Veterinary Medicine, Vienna, Austria.ORCID 0000-0001-9363-0412
Christian StockmannInstitute of Anatomy, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-9726-6838
University of Zurich · CHUniversity College Dublin · IEUniversity of Veterinary Medicine Vienna · ATEssen University Hospital · DEInserm · FRLaboratory of Excellence GR-Ex · FRUniversity of Ulster · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gut innate lymphoid cells (ILCs) show remarkable phenotypic diversity, yet microenvironmental factors that drive this plasticity are incompletely understood. The balance between NKp46+, IL-22-producing, group 3 ILCs (ILC3s) and interferon (IFN)-γ-producing group 1 ILCs (ILC1s) contributes to gut homeostasis. The gut mucosa is characterized by physiological hypoxia, and adaptation to low oxygen is mediated by hypoxia-inducible transcription factors (HIFs). However, the impact of HIFs on ILC phenotype and gut homeostasis is not well understood. Mice lacking the HIF-1α isoform in NKp46+ ILCs show a decrease in IFN-γ-expressing, T-bet+, NKp46+ ILC1s and a concomitant increase in IL-22-expressing, RORγt+, NKp46+ ILC3s in the gut mucosa. Single-cell RNA sequencing revealed HIF-1α as a driver of ILC phenotypes, where HIF-1α promotes the ILC1 phenotype by direct up-regulation of T-bet. Loss of HIF-1α in NKp46+ cells prevents ILC3-to-ILC1 conversion, increases the expression of IL-22-inducible genes, and confers protection against intestinal damage. Taken together, our results suggest that HIF-1α shapes the ILC phenotype in the gut.

Indexed as

Immunity, InnateAnimalsAntigens, LyBiomarkersCell PlasticityDisease SusceptibilityGastrointestinal TractGene ExpressionGene Expression ProfilingHomeostasisHypoxia-Inducible Factor 1, alpha SubunitImmunity, MucosalImmunophenotypingIntestinal MucosaIntraepithelial LymphocytesLymphocyte SubsetsAntigens, LyBiomarkersHif1a protein, mouseHypoxia-Inducible Factor 1, alpha SubunitNatural Cytotoxicity Triggering Receptor 1Ncr1 protein, mouse

Identifiers

PMID35024767
PMCPMC8763886
OpenAlexW4206552237

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.