Evidence map›Paper›PMID 35023008›Full record

ArticleMolecular biology reports2022

Applicability of inter-primer binding site iPBS- retrotransposon marker system for the assessment of genetic diversity and population structure of Peruvian rosewood (Aniba rosaeodora Ducke) germplasm.

Faheem Shehzad Baloch, Stalin Juan Vasquez Guizado, Muhammad Tanveer Altaf, Ilker Yüce, Yeter Çilesiz, Mehmet Bedir, Muhammad Azhar Nadeem, Rustu Hatipoglu, Juan Carlos Castro Gómez

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Article in Molecular biology reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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3 citing papers in PubMed.

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5 · Who and what money

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9 authors.

Faheem Shehzad BalochFaculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, 58140, Sivas, Turkey. balochfaheem13@gmail.com.ORCID http://orcid.org/0000-0002-7470-0080
Stalin Juan Vasquez GuizadoSpecialized Unit of Biotechnology, Research Center of Natural Resources of the Amazon, National University of the Peruvian Amazon, Iquitos, 1600, Peru.
Muhammad Tanveer AltafFaculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, 58140, Sivas, Turkey.
Ilker YüceFaculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, 58140, Sivas, Turkey.
Yeter ÇilesizFaculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, 58140, Sivas, Turkey.
Mehmet BedirFaculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, 58140, Sivas, Turkey.
Muhammad Azhar NadeemFaculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, 58140, Sivas, Turkey.
Rustu HatipogluDepartment of Field Crops, Faculty of Agricultural, University of Cukurova, 01380, Adana, Turkey.
Juan Carlos Castro GómezSpecialized Unit of Biotechnology, Research Center of Natural Resources of the Amazon, National University of the Peruvian Amazon, Iquitos, 1600, Peru.

Funding

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6 · The paper itself

Abstract

backgroundRosewood (Aniba rosaeodora Ducke), which has a great demand due to its essential oil globally, is an evergreen tree of the Amazon forests. Rosewood natural stands have been depleted through deforestation and the destruction of habitat. Currently, rosewood is included in the ICUN red list of endangered species. METHODS AND

resultsThe 11 highly polymorphic primers amplified total 305 bands of which 301 (98.69%) were polymorphic. The number of effective alleles (Ne), Shannon's information index (I), overall gene diversity (Ht), gene diversity (h), and polymorphism information content (PIC) were (1.562), (0.505), (0.330), (0.337) and (0.343), respectively. These diversity indices explored high genetic diversity in rosewood germplasm. Among studied germplasm, the Santa Marta population was found most diverse by reflecting higher values of diversity indices while the Zungarococha population was found least diverse. The analysis of molecular variance (AMOVA) revealed that 79% of the genetic variation was within the populations. The STRUCTURE algorithm, unweighted pair group with arithmetic mean (UPGMA), and principal coordinate's analysis (PCoA) separated all germplasms into different population groups according to their geographic locations. Santa Marta population was found more diverse by reflecting higher values of diversity indices. The maximum genetic distance (0.868) was found between the Huajoya-10 and Nanay-3. In this investigation, iPBS- retrotransposon marker system was used to explore the genetic diversity of Peruvian rosewood germplasm.

conclusionsThe results in this study such as higher genetic diversity indices, AMOVA (79%) within population and PIC value (0.343) showed the utility and reproducibility of iPBS-retrotransposons in this species successfully. The STRUCTURE algorithm separated the germplasms into six population groups according to their geographic locations. These results have valuable information for the conservation, management strategies and future breeding activities of rosewood.

Indexed as

Genetic VariationRetroelementsBinding SitesMicrosatellite RepeatsPeruPhylogenyPlant BreedingReproducibility of ResultsRetroelementsAniba rosaeodora DuckeConservation geneticsDiversityGermplasm characterizationiPBS-retrotransposonPeruPopulation structure

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PMID35023008

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