Evidence map›Paper›PMID 35022771›Full record

ArticleMolecular biology and evolution2022

Duplication and Specialization of NUDX1 in Rosaceae Led to Geraniol Production in Rose Petals.

Corentin Conart, Nathanaelle Saclier, Fabrice Foucher, Clément Goubert, Aurélie Rius-Bony, Saretta N Paramita, Sandrine Moja, Tatiana Thouroude, Christophe Douady, Pulu Sun and 11 more

Open access · goldAbstract read
In one paragraph

Article in Molecular biology and evolution, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

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  14. A cytosolic bifunctional geranyl/farnesyl diphosphate synthase provides MVA-derived GPP for geraniol biosynthesis in rose flowers.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 4 countries.

Corentin ConartUniversité Lyon, Université Saint-Etienne, CNRS, UMR 5079, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Saint-Etienne, France.
Nathanaelle SaclierUniversité Lyon, Université Claude Bernard Lyon 1, CNRS, UMR 5023, ENTPE, Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés, Villeurbanne, France.
Fabrice FoucherUniv Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, Angers, France.ORCID 0000-0002-3693-7183
Clément GoubertDepartment of Human Genetics, McGill University Genome Center, Montreal, QC, Canada.
Aurélie Rius-BonyUniversité Lyon, Université Saint-Etienne, CNRS, UMR 5079, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Saint-Etienne, France.
Saretta N ParamitaUniversité Lyon, Université Saint-Etienne, CNRS, UMR 5079, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Saint-Etienne, France.
Sandrine MojaUniversité Lyon, Université Saint-Etienne, CNRS, UMR 5079, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Saint-Etienne, France.
Tatiana ThouroudeUniv Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, Angers, France.
Christophe DouadyUniversité Lyon, Université Claude Bernard Lyon 1, CNRS, UMR 5023, ENTPE, Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés, Villeurbanne, France.
Pulu SunGreen Life Sciences Research Cluster, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands.
Baptiste NairaudUniversité Lyon, Université Saint-Etienne, CNRS, UMR 5079, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Saint-Etienne, France.
Denis Saint-MarcouxUniversité Lyon, Université Saint-Etienne, CNRS, UMR 5079, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Saint-Etienne, France.
Muriel BahutUniv Angers, SFR QUASAV, Angers, France.
Julien JeauffreUniv Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, Angers, France.
Laurence Hibrand Saint-OyantUniv Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, Angers, France.
Robert C SchuurinkGreen Life Sciences Research Cluster, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands.
Jean-Louis MagnardUniversité Lyon, Université Saint-Etienne, CNRS, UMR 5079, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Saint-Etienne, France.
Benoît BoachonUniversité Lyon, Université Saint-Etienne, CNRS, UMR 5079, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Saint-Etienne, France.
Natalia DudarevaDepartment of Biochemistry, Purdue University, West Lafayette, IN, USA.
Sylvie BaudinoUniversité Lyon, Université Saint-Etienne, CNRS, UMR 5079, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Saint-Etienne, France.ORCID 0000-0002-3367-172X
Jean-Claude CaissardUniversité Lyon, Université Saint-Etienne, CNRS, UMR 5079, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Saint-Etienne, France.
Université Claude Bernard Lyon 1 · FRInstitut Agro Rennes-Angers · FRUniversity of Amsterdam · NLMcGill Genome Centre · CAPurdue University West Lafayette · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nudix hydrolases are conserved enzymes ubiquitously present in all kingdoms of life. Recent research revealed that several Nudix hydrolases are involved in terpenoid metabolism in plants. In modern roses, RhNUDX1 is responsible for formation of geraniol, a major compound of rose scent. Nevertheless, this compound is produced by monoterpene synthases in many geraniol-producing plants. As a consequence, this raised the question about the origin of RhNUDX1 function and the NUDX1 gene evolution in Rosaceae, in wild roses or/and during the domestication process. Here, we showed that three distinct clades of NUDX1 emerged in the Rosoidae subfamily (Nudx1-1 to Nudx1-3 clades), and two subclades evolved in the Rosa genus (Nudx1-1a and Nudx1-1b subclades). We also showed that the Nudx1-1b subclade was more ancient than the Nudx1-1a subclade, and that the NUDX1-1a gene emerged by a trans-duplication of the more ancient NUDX1-1b gene. After the transposition, NUDX1-1a was cis-duplicated, leading to a gene dosage effect on the production of geraniol in different species. Furthermore, the NUDX1-1a appearance was accompanied by the evolution of its promoter, most likely from a Copia retrotransposon origin, leading to its petal-specific expression. Thus, our data strongly suggest that the unique function of NUDX1-1a in geraniol formation was evolved naturally in the genus Rosa before domestication.

Indexed as

RosaRosaceaeAcyclic MonoterpenesDomesticationAcyclic MonoterpenesgeraniolmonoterpenesNudix hydrolaseNUDX1 syntenyRosaRosaceae

Identifiers

PMID35022771
PMCPMC8857926
OpenAlexW4206501035

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.