Evidence map›Paper›PMID 35022715›Full record

ArticleHuman molecular genetics2022

Whole exome sequence analysis in 51 624 participants identifies novel genes and variants associated with refractive error and myopia.

Jeremy A Guggenheim, Rosie Clark, Jiangtian Cui, Louise Terry, Karina Patasova, Annechien E G Haarman, Anthony M Musolf, Virginie J M Verhoeven, Caroline C W Klaver, Joan E Bailey-Wilson and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Cone Rod Homeobox (Ophthalmic genetics · 2025
    Review
  8. Article
  9. Exploring the Research Landscape of High Myopia: Trends, Contributors, and Key Areas of Focus.Medical science monitor : international medical journal of experimental and clinical research · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Genetic and clinical landscape ofThe British journal of ophthalmology · 2023
    Article
  14. The Role of Retinal Dysfunction in Myopia Development.Cellular and molecular neurobiology · 2023
    Review
  15. A view from the clinic - Perspectives from Dutch patients and professionals on high myopia care.Ophthalmic & physiological optics : the journal of the British College of Ophthalmic Opticians (Optometrists) · 2023
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 5 countries.

Jeremy A GuggenheimSchool of Optometry & Vision Sciences, Cardiff University, Cardiff, CF24 4HQ, UK.ORCID 0000-0001-5164-340X
Rosie ClarkSchool of Optometry & Vision Sciences, Cardiff University, Cardiff, CF24 4HQ, UK.ORCID 0000-0003-1247-4636
Jiangtian CuiSchool of Optometry & Vision Sciences, Cardiff University, Cardiff, CF24 4HQ, UK.
Louise TerrySchool of Optometry & Vision Sciences, Cardiff University, Cardiff, CF24 4HQ, UK.ORCID 0000-0002-6200-8230
Karina PatasovaSection of Ophthalmology, School of Life Course Sciences, King's College London, WC2R 2LS, UK.
Annechien E G HaarmanDepartment of Ophthalmology, Erasmus Medical Center GD, 3015GD Rotterdam, The Netherlands.ORCID 0000-0002-1452-5700
Anthony M MusolfStatistical Genetics Section, Computational and Statistical Genomics Branch, Nation Human Genome Research Institute, National Institutes of Health, Baltimore, MD 21224, USA.
Virginie J M VerhoevenDepartment of Ophthalmology, Erasmus Medical Center GD, 3015GD Rotterdam, The Netherlands.ORCID 0000-0001-7359-7862
Caroline C W KlaverDepartment of Ophthalmology, Erasmus Medical Center GD, 3015GD Rotterdam, The Netherlands.ORCID 0000-0002-2355-5258
Joan E Bailey-WilsonStatistical Genetics Section, Computational and Statistical Genomics Branch, Nation Human Genome Research Institute, National Institutes of Health, Baltimore, MD 21224, USA.ORCID 0000-0002-9153-2920
Pirro G HysiSection of Ophthalmology, School of Life Course Sciences, King's College London, WC2R 2LS, UK.ORCID 0000-0001-5752-2510
Cathy WilliamsCentre for Academic Child Health, Population Health Sciences, Bristol Medical School, University of Bristol, Bristol, BS8 1NU, UK.ORCID 0000-0002-9133-2021
CREAM Consortium
UK Biobank Eye Vision Consortium
Cardiff University · GBKing's College London · GBNational Institutes of Health · USAt Bristol · GBGGD Rotterdam-Rijnmond · NLRadboud University Nijmegen · NLRotterdam University of Applied Sciences · NL

Funding

Genetic Epidemiology of Complex TraitsZIAHG200327 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BAILEY-WILSON, JOAN ELLEN · 2009 to 2022
$10.5M
6 · The paper itself

Abstract

Refractive errors are associated with a range of pathological conditions, such as myopic maculopathy and glaucoma, and are highly heritable. Studies of missense and putative loss of function (pLOF) variants identified via whole exome sequencing (WES) offer the prospect of directly implicating potentially causative disease genes. We performed a genome-wide association study for refractive error in 51 624 unrelated adults, of European ancestry, aged 40-69 years from the UK and genotyped using WES. After testing 29 179 pLOF and 495 263 missense variants, 1 pLOF and 18 missense variants in 14 distinct genomic regions were taken forward for fine-mapping analysis. This yielded 19 putative causal variants of which 18 had a posterior inclusion probability >0.5. Of the 19 putative causal variants, 12 were novel discoveries. Specific variants were associated with a more myopic refractive error, while others were associated with a more hyperopic refractive error. Association with age of onset of spectacle wear (AOSW) was examined in an independent validation sample (38 100 early AOSW cases and 74 243 controls). Of 11 novel variants that could be tested, 8 (73%) showed evidence of association with AOSW status. This work identified COL4A4 and ATM as novel candidate genes associated with refractive error. In addition, novel putative causal variants were identified in the genes RASGEF1, ARMS2, BMP4, SIX6, GSDMA, GNGT2, ZNF652 and CRX. Despite these successes, the study also highlighted the limitations of community-based WES studies compared with high myopia case-control WES studies.

Indexed as

MyopiaRefractive ErrorsAdultExomeExome SequencingGasderminsGenome-Wide Association StudyHumansNeoplasm ProteinsPore Forming Cytotoxic ProteinsGasderminsGSDMA protein, humanNeoplasm ProteinsPore Forming Cytotoxic Proteins

Identifiers

PMID35022715
PMCPMC9169456
OpenAlexW4206680742

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.