Evidence map›Paper›PMID 35022416›Full record

ArticleNature communications2022

Biosensor for branched-chain amino acid metabolism in yeast and applications in isobutanol and isopentanol production.

Yanfei Zhang, Jeremy D Cortez, Sarah K Hammer, César Carrasco-López, Sergio Á García Echauri, Jessica B Wiggins, Wei Wang, José L Avalos

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Mining Genetically Encoded Biosensors from Filamentous Fungi.Journal of fungi (Basel, Switzerland) · 2026
    Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Efficient production of salicylic acid through CmeR-PBiotechnology for biofuels and bioproducts · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yanfei ZhangDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA.
Jeremy D Cortez *Department of Molecular Biology, Princeton University, Princeton, NJ, USA.
Sarah K Hammer *Department of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA.
César Carrasco-LópezDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA.ORCID http://orcid.org/0000-0002-3853-8776
Sergio Á García EchauriDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA.
Jessica B WigginsGenomics Core Facility, Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.
Wei WangGenomics Core Facility, Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.ORCID http://orcid.org/0000-0002-6558-4858
José L AvalosDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA. javalos@princeton.edu.ORCID http://orcid.org/0000-0002-7209-4208

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007388 · NIGMS · PRINCETON UNIVERSITY · PI CRISTEA, ILEANA M. · 1985 to 2022
$27.4M
NIGMS NIH HHS T32 GM007388
6 · The paper itself

Abstract

Branched-chain amino acid (BCAA) metabolism fulfills numerous physiological roles and can be harnessed to produce valuable chemicals. However, the lack of eukaryotic biosensors specific for BCAA-derived products has limited the ability to develop high-throughput screens for strain engineering and metabolic studies. Here, we harness the transcriptional regulator Leu3p from Saccharomyces cerevisiae to develop a genetically encoded biosensor for BCAA metabolism. In one configuration, we use the biosensor to monitor yeast production of isobutanol, an alcohol derived from valine degradation. Small modifications allow us to redeploy Leu3p in another biosensor configuration that monitors production of the leucine-derived alcohol, isopentanol. These biosensor configurations are effective at isolating high-producing strains and identifying enzymes with enhanced activity from screens for branched-chain higher alcohol (BCHA) biosynthesis in mitochondria as well as cytosol. Furthermore, this biosensor has the potential to assist in metabolic studies involving BCAA pathways, and offers a blueprint to develop biosensors for other products derived from BCAA metabolism.

Indexed as

Biosensing Techniques2-Isopropylmalate SynthaseAmino Acids, Branched-ChainBiosynthetic PathwaysButanolsEthanolHigh-Throughput Screening AssaysLeucineMetabolic EngineeringPentanolsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSynthetic Biology2-Isopropylmalate SynthaseAmino Acids, Branched-ChainButanolsEthanolisobutyl alcoholisopentyl alcoholLEU4 protein, S cerevisiaeLeucinePentanolsSaccharomyces cerevisiae Proteins

Identifiers

PMID35022416
PMCPMC8755756

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.