Evidence map›Paper›PMID 35022248›Full record

ArticleLife science alliance2022

Identification of human gene research articles with wrongly identified nucleotide sequences.

Yasunori Park, Rachael A West, Pranujan Pathmendra, Bertrand Favier, Thomas Stoeger, Amanda Capes-Davis, Guillaume Cabanac, Cyril Labbé, Jennifer A Byrne

Open access · goldAbstract read
In one paragraph

Article in Life science alliance, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 36 citations in OpenAlex.

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  13. Metadata integrity in bioinformatics: Bridging the gap between data and knowledge.Computational and structural biotechnology journal · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Yasunori ParkFaculty of Medicine and Health, The University of Sydney, Sydney, Australia.ORCID 0000-0001-5682-1551
Rachael A WestFaculty of Medicine and Health, The University of Sydney, Sydney, Australia.ORCID 0000-0003-3162-4425
Pranujan PathmendraFaculty of Medicine and Health, The University of Sydney, Sydney, Australia.ORCID 0000-0002-9425-6271
Bertrand FavierUniversité Grenoble Alpes, Translationnelle et Innovation en Médecine et Complexité, Grenoble, France.
Thomas StoegerSuccessful Clinical Response in Pneumonia Therapy Systems Biology Center, Northwestern University, Evanston, IL, USA.
Amanda Capes-DavisFaculty of Medicine and Health, The University of Sydney, Sydney, Australia.ORCID 0000-0003-4184-6339
Guillaume CabanacComputer Science Department, Institut de Recherche en Informatique de Toulouse, Unité Mixte de Recherche 5505 Centre National de la Recherche Scientifique (CNRS), University of Toulouse, Toulouse, France.
Cyril LabbéUniversité Grenoble Alpes, CNRS, Grenoble INP, Laboratoire d'Informatique de Grenoble, Grenoble, France.
Jennifer A ByrneFaculty of Medicine and Health, The University of Sydney, Sydney, Australia jennifer.byrne@health.nsw.gov.au.ORCID 0000-0002-8923-0587
The University of Sydney · AUCentre National de la Recherche Scientifique · FRInstitut polytechnique de Grenoble · FRNorthwestern University · USTranslational Innovation in Medicine and Complexity · FR

Funding

Technology CoreU19AI135964 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI RICHARD G WUNDERINK · 2018 to 2026
$24.7M
Integrative Multi-Scale Systems Analysis of Gene-Expression-Driven Aging Morbidity - SupplementK99AG068544 · NIA · NORTHWESTERN UNIVERSITY · PI STOEGER, THOMAS · 2020 to 2022
$280k
NIAID NIH HHS U19 AI135964NIA NIH HHS K99 AG068544
6 · The paper itself

Abstract

Nucleotide sequence reagents underpin molecular techniques that have been applied across hundreds of thousands of publications. We have previously reported wrongly identified nucleotide sequence reagents in human research publications and described a semi-automated screening tool Seek & Blastn to fact-check their claimed status. We applied Seek & Blastn to screen >11,700 publications across five literature corpora, including all original publications in

Indexed as

Genetic ResearchBase SequenceGenome, HumanHuman GeneticsHumansProteinsPublicationsScientific Experimental ErrorProteins

Identifiers

PMID35022248
PMCPMC8807875
OpenAlexW4206098416

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.