Evidence map›Paper›PMID 35021077›Full record

ArticleCell reports2022

Stride-level analysis of mouse open field behavior using deep-learning-based pose estimation.

Keith Sheppard, Justin Gardin, Gautam S Sabnis, Asaf Peer, Megan Darrell, Sean Deats, Brian Geuther, Cathleen M Lutz, Vivek Kumar

Abstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Keith SheppardThe Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.
Justin GardinThe Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.
Gautam S SabnisThe Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.
Asaf PeerThe Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.
Megan DarrellThe Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.
Sean DeatsThe Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.
Brian GeutherThe Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.
Cathleen M LutzThe Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.
Vivek KumarThe Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA. Electronic address: vivek.kumar@jax.org.

Funding

Establishment and Characterization of Novel Mutant Mouse Models for the Addiction Research CommunityU01DA051235 · NIDA · JACKSON LABORATORY · PI KUMAR, VIVEK · 2021 to 2025
$4.2M
Sequencing Mutant Mice With Altered Cocaine ResponsesU01DA041668 · NIDA · JACKSON LABORATORY · PI KUMAR, VIVEK · 2016 to 2020
$2.8M
Summer Research Experience in Neurobiology at The Jackson LaboratoryR25NS078795 · NINDS · JACKSON LABORATORY · PI Robert W. Burgess, Laura J Muller · 2012 to 2026
$708k
Application of Machine Vision to Determine the Influence of Sleep States and Social Interactions on Vulnerability to Drug AddictionR21DA048634 · NIDA · JACKSON LABORATORY · PI KUMAR, VIVEK · 2019 to 2020
$468k
NIDA NIH HHS R21 DA048634NIDA NIH HHS U01 DA041668NIDA NIH HHS U01 DA051235NINDS NIH HHS R25 NS078795
6 · The paper itself

Abstract

Gait and posture are often perturbed in many neurological, neuromuscular, and neuropsychiatric conditions. Rodents provide a tractable model for elucidating disease mechanisms and interventions. Here, we develop a neural-network-based assay that adopts the commonly used open field apparatus for mouse gait and posture analysis. We quantitate both with high precision across 62 strains of mice. We characterize four mutants with known gait deficits and demonstrate that multiple autism spectrum disorder (ASD) models show gait and posture deficits, implying this is a general feature of ASD. Mouse gait and posture measures are highly heritable and fall into three distinct classes. We conduct a genome-wide association study to define the genetic architecture of stride-level mouse movement in the open field. We provide a method for gait and posture extraction from the open field and one of the largest laboratory mouse gait and posture data resources for the research community.

Indexed as

AnimalsAutism Spectrum DisorderDeep LearningExploratory BehaviorGaitGenome-Wide Association StudyMiceMovementNerve NetOpen Field TestPostural Balanceanimal behaviorcomplex behaviorgait analysisgenome-wide association study (GWAS)key-point detectionMachine learningneural networkpose estimationposture analysisquantitative genetics

Identifiers

PMID35021077
PMCPMC8796662

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.