Evidence map›Paper›PMID 35020354›Full record

ArticleAnalytical chemistry2022

"Fix and Click" for Assay of Sphingolipid Signaling in Single Primary Human Intestinal Epithelial Cells.

Luke A Gallion, Yuli Wang, Angelo Massaro, Ming Yao, Brae V Petersen, Quanzheng Zhang, Weigang Huang, Adam J Carr, Qisheng Zhang, Nancy L Allbritton

Open access · greenAbstract read
In one paragraph

Article in Analytical chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Probing Glycerolipid Metabolism using a Caged Clickable Glycerol-3-Phosphate Probe.Chembiochem : a European journal of chemical biology · 2024
    Article
  3. Article
  4. Article
  5. Analytical Techniques for Single-Cell Biochemical Assays of Lipids.Annual review of biomedical engineering · 2023
    Review
  6. [Annual review of capillary electrophoresis technology in 2022].Se pu = Chinese journal of chromatography · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Luke A GallionDepartment of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27514, United States.
Yuli WangDepartment of Bioengineering, University of Washington, Seattle, Washington 98105, United States.
Angelo MassaroDepartment of Bioengineering, University of Washington, Seattle, Washington 98105, United States.
Ming YaoDepartment of Bioengineering, University of Washington, Seattle, Washington 98105, United States.
Brae V PetersenDepartment of Bioengineering, University of Washington, Seattle, Washington 98105, United States.
Quanzheng ZhangDivision of Chemical Biology and Medicinal Chemistry, Eshelman School of Pharmacy, Chapel Hill, North Carolina 27514, United States.
Weigang HuangDivision of Chemical Biology and Medicinal Chemistry, Eshelman School of Pharmacy, Chapel Hill, North Carolina 27514, United States.
Adam J CarrDivision of Chemical Biology and Medicinal Chemistry, Eshelman School of Pharmacy, Chapel Hill, North Carolina 27514, United States.
Qisheng ZhangDivision of Chemical Biology and Medicinal Chemistry, Eshelman School of Pharmacy, Chapel Hill, North Carolina 27514, United States.
Nancy L AllbrittonDepartment of Bioengineering, University of Washington, Seattle, Washington 98105, United States.ORCID 0000-0002-9242-768X
University of North Carolina at Chapel Hill · USUniversity of Washington · US

Funding

DEVELOPMENT OF HUMAN INTESTINAL SIMULACRAR01DK109559 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ALLBRITTON, NANCY L., BULTMAN, SCOTT J · 2015 to 2019
$5.2M
MICROFABRICATED INSTRUMENTATION TO MEASURE SPHINGOLIPID SIGNALING IN HUMAN ACUTE MYELOID LEUKEMIAR01CA233811 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ALLBRITTON, NANCY L., ARMISTEAD, PAUL MICHAEL · 2019 to 2023
$3.1M
Development of a microphysiologic system to assay the interaction of the human colonic epithelium on Clostridium difficileR01DK120606 · NIDDK · UNIVERSITY OF WASHINGTON · PI ALLBRITTON, NANCY L., SHEIKH, SHEHZAD Z. · 2020 to 2023
$2.2M
Development of an Ultrasensitive Microdevice for the Investigation of Sphingosine Kinase Activity in Single CellsF31CA243312 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GALLION, LUKE AUSTIN · 2019 to 2021
$78k
NCI NIH HHS F31 CA243312NCI NIH HHS R01 CA233811NIDDK NIH HHS R01 DK109559NIDDK NIH HHS R01 DK120606
6 · The paper itself

Abstract

Capillary electrophoresis with fluorescence detection (CE-F) is a powerful method to measure enzyme activation in single cells. However, cellular enzymatic assays used in CE-F routinely utilize reporter substrates that possess a bulky fluorophore that may impact enzyme kinetics. To address these challenges, we describe a "fix and click" method utilizing an alkyne-terminated enzyme activation reporter, aldehyde-based fixation, and a click chemistry reaction to attach a fluorophore prior to analysis by single-cell CE-F. The "fix and click" strategy was utilized to investigate sphingolipid signaling in both immortalized cell lines and primary human colonic epithelial cells. When the sphingosine alkyne reporter was loaded into cells, this reporter was metabolized to ceramide (31.6 ± 3.3% peak area) without the production of sphingosine-1-phosphate. In contrast, when the reporter sphingosine fluorescein was introduced into cells, sphingosine fluorescein was converted to sphingosine-1-phosphate and downstream products (32.8 ± 5.7% peak area) without the formation of ceramide. Sphingolipid metabolism was measured in single cells from both differentiated and stem/proliferative human colonic epithelium using "fix and click" paired with CE-F to highlight the diversity of sphingosine metabolism in single cells from primary human colonic epithelium. This novel method will find widespread utility for the performance of single-cell enzyme assays by virtue of its ability to temporally and spatially separate cellular reactions with alkyne-terminated reporters, followed by the assay of enzyme activation at a later time and place.

Indexed as

LysophospholipidsSphingolipidsBiological AssayCeramidesClick ChemistryEpithelial CellsHumansSphingosineCeramidesLysophospholipidsSphingolipidsSphingosine

Identifiers

PMID35020354
PMCPMC8931668
OpenAlexW4206563867

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.