Evidence map›Paper›PMID 35019938›Full record

ArticleThe Journal of cell biology2022

Active RB causes visible changes in nuclear organization.

Badri Krishnan, Takaaki Yasuhara, Purva Rumde, Marcello Stanzione, Chenyue Lu, Hanjun Lee, Michael S Lawrence, Lee Zou, Linda T Nieman, Ioannis Sanidas and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of cell biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Coupling of stemness maintenance with cell cycle control in stem cells.Frontiers in cell and developmental biology · 2025
    Review
  3. Cancer takes many paths through G1/S.Trends in cell biology · 2024
    Review
  4. Review
  5. Article
  6. Article
  7. Dual regulations of cell cycle regulator DPa by auxin inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Review
  9. Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Badri KrishnanMassachusetts General Hospital Cancer Center and Harvard Medical School, Charlestown, MA.ORCID 0000-0002-8082-4944
Takaaki YasuharaMassachusetts General Hospital Cancer Center and Harvard Medical School, Charlestown, MA.
Purva RumdeMassachusetts General Hospital Cancer Center and Harvard Medical School, Charlestown, MA.
Marcello StanzioneMassachusetts General Hospital Cancer Center and Harvard Medical School, Charlestown, MA.ORCID 0000-0001-5842-8649
Chenyue LuMassachusetts General Hospital Cancer Center and Harvard Medical School, Charlestown, MA.
Hanjun LeeMassachusetts General Hospital Cancer Center and Harvard Medical School, Charlestown, MA.ORCID 0000-0002-7316-8459
Michael S LawrenceMassachusetts General Hospital Cancer Center and Harvard Medical School, Charlestown, MA.
Lee ZouMassachusetts General Hospital Cancer Center and Harvard Medical School, Charlestown, MA.
Linda T NiemanMassachusetts General Hospital Cancer Center and Harvard Medical School, Charlestown, MA.ORCID 0000-0002-0141-8308
Ioannis SanidasMassachusetts General Hospital Cancer Center and Harvard Medical School, Charlestown, MA.ORCID 0000-0002-9063-6840
Nicholas J DysonMassachusetts General Hospital Cancer Center and Harvard Medical School, Charlestown, MA.ORCID 0000-0001-8119-5513
Harvard University · USBroad Institute · US

Funding

Deciphering the code of RB phosphorylationR01CA236538 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI DYSON, NICHOLAS J · 2018 to 2022
$2.5M
The consequences of RB-lossR01GM117413 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI DYSON, NICHOLAS J · 2016 to 2019
$2.1M
NCI NIH HHS R01 CA236538NIGMS NIH HHS R01 GM117413NIH HHS CA1977796NIH HHS GM117413
6 · The paper itself

Abstract

RB restricts G1/S progression by inhibiting E2F. Here, we show that sustained expression of active RB, and prolonged G1 arrest, causes visible changes in chromosome architecture that are not directly associated with E2F inhibition. Using FISH probes against two euchromatin RB-associated regions, two heterochromatin domains that lack RB-bound loci, and two whole-chromosome probes, we found that constitutively active RB (ΔCDK-RB) promoted a more diffuse, dispersed, and scattered chromatin organization. These changes were RB dependent, were driven by specific isoforms of monophosphorylated RB, and required known RB-associated activities. ΔCDK-RB altered physical interactions between RB-bound genomic loci, but the RB-induced changes in chromosome architecture were unaffected by dominant-negative DP1. The RB-induced changes appeared to be widespread and influenced chromosome localization within nuclei. Gene expression profiles revealed that the dispersion phenotype was associated with an increased autophagy response. We infer that, after cell cycle arrest, RB acts through noncanonical mechanisms to significantly change nuclear organization, and this reorganization correlates with transitions in cellular state.

Indexed as

AutophagyCell Cycle CheckpointsCell LineCell NucleusChromatinDNA Topoisomerases, Type IHistone DeacetylasesHumansMutationPhenotypeProtein BindingRetinoblastoma ProteinChromatinDNA Topoisomerases, Type IHistone DeacetylasesRetinoblastoma Protein

Identifiers

PMID35019938
PMCPMC8759594
OpenAlexW4206580002

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.